Download MendeleyStructure of a OpuBC mutant with bound Glycine betaine
Peherstorfer, S., Teichmann, L., Smits, S.H., Schmitt, L., Bremer, E.To be published.
6EYG
Structure of a OpuBC mutant with bound Glycine betaine
- PDB DOI: https://doi.org/10.2210/pdb6EYG/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-11-13 Released: 2018-11-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.219
- R-Value Work: 0.181
- R-Value Observed: 0.183
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC | 306 | Bacillus subtilis | Mutation(s): 0 Gene Names: B4417_3194 |  | |
UniProt | |||||
Find proteins for Q45462 (Bacillus subtilis (strain 168)) Explore Q45462 Go to UniProtKB: Q45462 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q45462 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BET Query on BET | B [auth A] | TRIMETHYL GLYCINE C5 H12 N O2 KWIUHFFTVRNATP-UHFFFAOYSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.42 Å
- R-Value Free: 0.219
- R-Value Work: 0.181
- R-Value Observed: 0.183
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 29.75 | α = 90 |
| b = 66.21 | β = 94.05 |
| c = 63.59 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-11-21 Deposition Author(s): Peherstorfer, S., Teichmann, L., Smits, S.H., Schmitt, L., Bremer, E.
Revision History (Full details and data files)
- Version 1.0: 2018-11-21
Type: Initial release - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references - Version 2.1: 2024-01-17
Changes: Refinement description
