Structure, Thermodynamics, and Kinetics of Plinabulin Binding to Two Tubulin Isotypes
La Sala, G., Olieric, N.(2019) Chem 
Experimental Data Snapshot
(2019) Chem 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin alpha-1B chain | 451 | Homo sapiens | Mutation(s): 0  Gene Names: TUBA1B EC: 3.6.5 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P68363 (Homo sapiens) Explore P68363  Go to UniProtKB:  P68363 | |||||
PHAROS:  P68363 GTEx:  ENSG00000123416  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68363 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tubulin beta-3 chain | 450 | Homo sapiens | Mutation(s): 0  Gene Names: TUBB3, TUBB4 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13509 (Homo sapiens) Explore Q13509  Go to UniProtKB:  Q13509 | |||||
PHAROS:  Q13509 GTEx:  ENSG00000258947  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13509 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Designed ankyrin repeat protein (DARPIN) D1 | C [auth F] | 157 | synthetic construct | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GTP Query on GTP | D [auth A] | GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N | |||
GDP Query on GDP | G [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
PN6 (Subject of Investigation/LOI) Query on PN6 | F [auth B] | (3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione C19 H20 N4 O2 UNRCMCRRFYFGFX-TYPNBTCFSA-N | |||
MG Query on MG | E [auth A], H [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 73.63 | α = 90 |
b = 91.2 | β = 97.49 |
c = 82.64 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |