Download MendeleyCrystal structure of MurE from E.coli
Koekemoer, L., Steindel, M., Fairhead, M., Talon, R., Douangamath, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., von Delft, F., Krojer, T.To be published.
7B60
Crystal structure of MurE from E.coli in complex with Z1269139261
- PDB DOI: https://doi.org/10.2210/pdb7B60/pdb
- Classification: BIOSYNTHETIC PROTEIN
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-12-07 Released: 2020-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.242
- R-Value Work: 0.216
- R-Value Observed: 0.217
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase | 496 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: murE, b0085, JW0083 EC: 6.3.2.13 |  | |
UniProt | |||||
Find proteins for P22188 (Escherichia coli (strain K12)) Explore P22188 Go to UniProtKB: P22188 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22188 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| O3D (Subject of Investigation/LOI) Query on O3D | C [auth A], D [auth A], F [auth B] | 4-[(furan-2-yl)methyl]-1lambda~6~,4-thiazinane-1,1-dione C9 H13 N O3 S AEOGPIJVSQTAII-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | E [auth A], G [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| IPA Query on IPA | H [auth B], I [auth B] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.242
- R-Value Work: 0.216
- R-Value Observed: 0.217
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.249 | α = 97.27 |
| b = 58.382 | β = 91.53 |
| c = 74.027 | γ = 105.61 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| xia2 | data reduction |
| xia2 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2020-12-23 Deposition Author(s): Koekemoer, L., Steindel, M., Fairhead, M., Talon, R., Douangamath, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., von Delft, F., Krojer, T., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2020-12-23
Type: Initial release - Version 1.1: 2020-12-30
Changes: Database references, Structure summary - Version 1.2: 2024-01-31
Changes: Data collection, Database references, Refinement description
