Structures of P. falciparum Hsp70-x nucleotide binding domain with small molecule ligands
Mohamad, N., O'Donoghue, A., Kantsadi, A.L., Vakonakis, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Heat shock protein 70 | 393 | Plasmodium falciparum 3D7 | Mutation(s): 0  Gene Names: PF3D7_0831700 | ||
UniProt | |||||
Find proteins for K7NTP5 (Plasmodium falciparum (isolate 3D7)) Explore K7NTP5  Go to UniProtKB:  K7NTP5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | K7NTP5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AN2 Query on AN2 | D [auth A], Q [auth B] | AMP PHOSPHORAMIDATE C10 H16 N6 O9 P2 FQMDCEJHLOLKLI-KQYNXXCUSA-N | |||
HR5 (Subject of Investigation/LOI) Query on HR5 | T [auth B] | ~{N}-(cyclobutylmethyl)-1,5-dimethyl-pyrazole-4-carboxamide C11 H17 N3 O WFWUJGIABNGBBR-UHFFFAOYSA-N | |||
PG4 Query on PG4 | I [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N | |||
PO4 Query on PO4 | L [auth A], Y [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | C [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CL Query on CL | M [auth A], N [auth A], O [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSX Query on CSX | A, B | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 79.89 | α = 90 |
b = 102.45 | β = 90 |
c = 103.69 | γ = 90 |
Software Name | Purpose |
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BUSTER | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Biotechnology and Biological Sciences Research Council (BBSRC) | United Kingdom | BB/R021759/1 |
H2020 Marie Curie Actions of the European Commission | European Union | 752069 |