8AJV

Crystal structure of the Q65N mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa crystallized in the presence of K+ cations


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.160 

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Ligand Structure Quality Assessment 


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Literature

Crystal structure of the Q65N mutant of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa crystallized in the presence of K+ cations

Drozdzal, P.Wozniak, K.Malecki, P.Gawel, M.Komorowska, M.Brzezinski, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Adenosylhomocysteinase472Pseudomonas aeruginosa PAO1Mutation(s): 1 
Gene Names: ahcYsahHPA0432
EC: 3.3.1.1 (PDB Primary Data), 3.13.2.1 (UniProt)
UniProt
Find proteins for Q9I685 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q9I685 
Go to UniProtKB:  Q9I685
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9I685
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

Download Ideal Coordinates CCD File 
AB [auth III]
CA [auth DDD]
I [auth AAA]
MA [auth FFF]
N [auth BBB]
AB [auth III],
CA [auth DDD],
I [auth AAA],
MA [auth FFF],
N [auth BBB],
RA [auth GGG],
VA [auth HHH],
W [auth CCC]
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
AA [auth CCC],
BA [auth CCC]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
GA [auth DDD]
HA [auth DDD]
IA [auth DDD]
JA [auth FFF]
K [auth AAA]
GA [auth DDD],
HA [auth DDD],
IA [auth DDD],
JA [auth FFF],
K [auth AAA],
KA [auth FFF],
L [auth AAA],
LA [auth FFF],
M [auth AAA],
NA [auth GGG],
OA [auth GGG],
PA [auth GGG],
QA [auth GGG],
R [auth BBB],
S [auth BBB],
T [auth BBB],
TA [auth HHH],
U [auth BBB],
UA [auth HHH],
XA [auth III],
Y [auth CCC],
YA [auth III],
Z [auth CCC],
ZA [auth III]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
GOL
Query on GOL

Download Ideal Coordinates CCD File 
BB [auth III]
CB [auth III]
DA [auth DDD]
EA [auth DDD]
FA [auth DDD]
BB [auth III],
CB [auth III],
DA [auth DDD],
EA [auth DDD],
FA [auth DDD],
J [auth AAA],
O [auth BBB],
P [auth BBB],
Q [auth BBB],
SA [auth GGG],
WA [auth HHH],
X [auth CCC]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
K (Subject of Investigation/LOI)
Query on K

Download Ideal Coordinates CCD File 
V [auth BBB]POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.160 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.481α = 90
b = 211.877β = 105.325
c = 111.351γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Polish National Science CentrePolandOPUS 2013/09/B/NZ1/01880

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-16
    Type: Initial release