Crystal structure of Helicobacter pylori glutamate racemase bound to D-glutamate and a likely crystallographic artifact
Propp, J., Spies, M.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamate racemase | 256 | Helicobacter pylori | Mutation(s): 0  Gene Names: murI EC: 5.1.1.3 | ||
UniProt | |||||
Find proteins for Q9ZLT0 (Helicobacter pylori (strain J99 / ATCC 700824)) Explore Q9ZLT0  Go to UniProtKB:  Q9ZLT0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9ZLT0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZMX (Subject of Investigation/LOI) Query on ZMX | C [auth A] | (2M)-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)-2-[5-(4-methylphenyl)-1,3-oxazol-2-yl]benzamide C28 H24 N4 O3 MWAFTVRXNXVJSM-UHFFFAOYSA-N | |||
DGL Query on DGL | D [auth A], F [auth B] | D-GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-GSVOUGTGSA-N | |||
DMS Query on DMS | E [auth A], G [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 63.35 | α = 90 |
b = 79.868 | β = 90 |
c = 114.887 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | 1R01GM138471-01 |