8UCA

Formation of I2+III2 supercomplex rescues respiratory chain defects

PDB DOI: https://doi.org/10.2210/pdb8UCA/pdb
EM Map EMD-42122: EMDB EMDataResource

Classification: ELECTRON TRANSPORT, Translocase
Organism(s): Mus musculus
Expression System: Mus musculus
Mutation(s): No

Deposited: 2023-09-26 Released: 2025-01-15
Deposition Author(s): Letts, J.A., Padavannil, A.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Formation of I2+III2 supercomplex rescues respiratory chain defects

Letts, J.A., Padavannil, A.

(2024) Cell Metab

DOI: https://doi.org/10.1016/j.cmet.2024.11.011

Macromolecule Content

Total Structure Weight: 2,577.85 kDa
Atom Count: 162,102
Modelled Residue Count: 20,141
Deposited Residue Count: 22,630
Unique protein chains: 55

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 3	A [auth 3], OA [auth 3a]	115	Mus musculus	Mutation(s): 0 Gene Names: mt-Nd3 EC: 7.1.1.2
UniProt
Find proteins for P03899 (Mus musculus) Explore P03899 Go to UniProtKB: P03899
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UniProt Group	P03899
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Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	B [auth S3], PA [auth s3]	263	Mus musculus	Mutation(s): 0 Gene Names: Ndufs3 EC: 7.1.1.2
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Find proteins for Q9DCT2 (Mus musculus) Explore Q9DCT2 Go to UniProtKB: Q9DCT2
IMPC: MGI:1915599
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UniProt Group	Q9DCT2
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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	C [auth S2], QA [auth s2]	463	Mus musculus	Mutation(s): 0 Gene Names: Ndufs2 EC: 7.1.1.2
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Find proteins for Q91WD5 (Mus musculus) Explore Q91WD5 Go to UniProtKB: Q91WD5
IMPC: MGI:2385112
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UniProt Group	Q91WD5
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 1	D [auth 1], RA [auth 1a]	318	Mus musculus	Mutation(s): 0 Gene Names: mt-Nd1, ND1 EC: 7.1.1.2
UniProt
Find proteins for Q4JFN6 (Mus musculus) Explore Q4JFN6 Go to UniProtKB: Q4JFN6
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UniProt Group	Q4JFN6
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 6	E [auth 6], SA [auth 6a]	172	Mus musculus	Mutation(s): 0 Gene Names: Mtnd6, mt-Nd6, Nd6 EC: 7.1.1.2
UniProt
Find proteins for P03925 (Mus musculus) Explore P03925 Go to UniProtKB: P03925
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UniProt Group	P03925
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 4L	F [auth 4L], TA [auth 4l]	98	Mus musculus	Mutation(s): 0 Gene Names: Mtnd4l, mt-Nd4l, Nd4l EC: 7.1.1.2
UniProt
Find proteins for P03903 (Mus musculus) Explore P03903 Go to UniProtKB: P03903
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UniProt Group	P03903
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Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 5	G [auth 5], UA [auth 5a]	607	Mus musculus	Mutation(s): 0 Gene Names: Mtnd5, mt-Nd5, Nd5 EC: 7.1.1.2
UniProt
Find proteins for P03921 (Mus musculus) Explore P03921 Go to UniProtKB: P03921
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UniProt Group	P03921
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 4	H [auth 4], VA [auth 4a]	459	Mus musculus	Mutation(s): 0 Gene Names: Mtnd4, mt-Nd4, Nd4 EC: 7.1.1.2
UniProt
Find proteins for P03911 (Mus musculus) Explore P03911 Go to UniProtKB: P03911
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UniProt Group	P03911
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase chain 2	I [auth 2], WA [auth 2a]	345	Mus musculus	Mutation(s): 0 Gene Names: mt-Nd2, Nd2 EC: 7.1.1.2
UniProt
Find proteins for P03893 (Mus musculus) Explore P03893 Go to UniProtKB: P03893
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UniProt Group	P03893
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	J [auth AL], XA [auth al]	355	Mus musculus	Mutation(s): 0 Gene Names: Ndufa10
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Find proteins for Q99LC3 (Mus musculus) Explore Q99LC3 Go to UniProtKB: Q99LC3
IMPC: MGI:1914523
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UniProt Group	Q99LC3
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	K [auth A9], YA [auth a9]	377	Mus musculus	Mutation(s): 0 Gene Names: Ndufa9
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Find proteins for Q9DC69 (Mus musculus) Explore Q9DC69 Go to UniProtKB: Q9DC69
IMPC: MGI:1913358
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UniProt Group	Q9DC69
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	L [auth S4], ZA [auth s4]	175	Mus musculus	Mutation(s): 0 Gene Names: Ndufs4
UniProt
Find proteins for Q9CXZ1 (Mus musculus) Explore Q9CXZ1 Go to UniProtKB: Q9CXZ1
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UniProt Group	Q9CXZ1
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	AB [auth s6], M [auth S6]	116	Mus musculus	Mutation(s): 0 Gene Names: Ndufs6, Ip13
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Find proteins for P52503 (Mus musculus) Explore P52503 Go to UniProtKB: P52503
IMPC: MGI:107932
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UniProt Group	P52503
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	BB [auth a2], N [auth A2]	99	Mus musculus	Mutation(s): 0 Gene Names: Ndufa2
UniProt
Find proteins for Q9CQ75 (Mus musculus) Explore Q9CQ75 Go to UniProtKB: Q9CQ75
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UniProt Group	Q9CQ75
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl carrier protein, mitochondrial	CB [auth ab], DB [auth ac], O [auth AB], P [auth AC]	156	Mus musculus	Mutation(s): 0 Gene Names: Ndufab1
UniProt
Find proteins for Q9CR21 (Mus musculus) Explore Q9CR21 Go to UniProtKB: Q9CR21
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UniProt Group	Q9CR21
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	EB [auth a5], Q [auth A5]	116	Mus musculus	Mutation(s): 0 Gene Names: Ndufa5
UniProt
Find proteins for Q9CPP6 (Mus musculus) Explore Q9CPP6 Go to UniProtKB: Q9CPP6
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UniProt Group	Q9CPP6
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	FB [auth a6], R [auth A6]	131	Mus musculus	Mutation(s): 0 Gene Names: Ndufa6
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Find proteins for Q9CQZ5 (Mus musculus) Explore Q9CQZ5 Go to UniProtKB: Q9CQZ5
IMPC: MGI:1914380
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UniProt Group	Q9CQZ5
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	GB [auth a8], S [auth A8]	172	Mus musculus	Mutation(s): 0 Gene Names: Ndufa8
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Find proteins for Q9DCJ5 (Mus musculus) Explore Q9DCJ5 Go to UniProtKB: Q9DCJ5
IMPC: MGI:1915625
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UniProt Group	Q9DCJ5
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	HB [auth am], T [auth AM]	142	Mus musculus	Mutation(s): 0 Gene Names: Ndufa11
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Find proteins for G5E814 (Mus musculus) Explore G5E814 Go to UniProtKB: G5E814
IMPC: MGI:1917125
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UniProt Group	G5E814
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	IB [auth ao], U [auth AO]	144	Mus musculus	Mutation(s): 0 Gene Names: Ndufa13, Grim19
UniProt
Find proteins for Q9ERS2 (Mus musculus) Explore Q9ERS2 Go to UniProtKB: Q9ERS2
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UniProt Group	Q9ERS2
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	JB [auth a1], V [auth A1]	70	Mus musculus	Mutation(s): 0 Gene Names: Ndufa1
UniProt
Find proteins for O35683 (Mus musculus) Explore O35683 Go to UniProtKB: O35683
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UniProt Group	O35683
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3	KB [auth a3], W [auth A3]	84	Mus musculus	Mutation(s): 0 Gene Names: Ndufa3
UniProt
Find proteins for Q9CQ91 (Mus musculus) Explore Q9CQ91 Go to UniProtKB: Q9CQ91
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UniProt Group	Q9CQ91
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial	LB [auth c1], X [auth C1]	76	Mus musculus	Mutation(s): 0 Gene Names: Ndufc1
UniProt
Find proteins for Q9CQY9 (Mus musculus) Explore Q9CQY9 Go to UniProtKB: Q9CQY9
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UniProt Group	Q9CQY9
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 subunit C2	MB [auth c2], Y [auth C2]	120	Mus musculus	Mutation(s): 0 Gene Names: Ndufc2
UniProt
Find proteins for Q9CQ54 (Mus musculus) Explore Q9CQ54 Go to UniProtKB: Q9CQ54
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UniProt Group	Q9CQ54
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	NB [auth s5], Z [auth S5]	106	Mus musculus	Mutation(s): 0 Gene Names: Ndufs5
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Find proteins for Q99LY9 (Mus musculus) Explore Q99LY9 Go to UniProtKB: Q99LY9
IMPC: MGI:1890889
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UniProt Group	Q99LY9
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1	AA [auth B1], OB [auth b1]	57	Mus musculus	Mutation(s): 0 Gene Names: Ndufb1
UniProt
Find proteins for P0DN34 (Mus musculus) Explore P0DN34 Go to UniProtKB: P0DN34
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UniProt Group	P0DN34
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	BA [auth BM], PB [auth bm]	151	Mus musculus	Mutation(s): 0 Gene Names: Ndufb11, Np15
UniProt
Find proteins for O09111 (Mus musculus) Explore O09111 Go to UniProtKB: O09111
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UniProt Group	O09111
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	CA [auth B5], QB [auth b5]	189	Mus musculus	Mutation(s): 0 Gene Names: Ndufb5
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Find proteins for Q9CQH3 (Mus musculus) Explore Q9CQH3 Go to UniProtKB: Q9CQH3
IMPC: MGI:1913296
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UniProt Group	Q9CQH3
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	DA [auth B6], RB [auth b6]	127	Mus musculus	Mutation(s): 0 Gene Names: Ndufb6, Gm137
UniProt
Find proteins for Q3UIU2 (Mus musculus) Explore Q3UIU2 Go to UniProtKB: Q3UIU2
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UniProt Group	Q3UIU2
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial	EA [auth B2], SB [auth b2]	105	Mus musculus	Mutation(s): 0 Gene Names: Ndufb2
UniProt
Find proteins for Q9CPU2 (Mus musculus) Explore Q9CPU2 Go to UniProtKB: Q9CPU2
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UniProt Group	Q9CPU2
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	FA [auth B3], TB [auth b3]	104	Mus musculus	Mutation(s): 0 Gene Names: Ndufb3
UniProt
Find proteins for Q9CQZ6 (Mus musculus) Explore Q9CQZ6 Go to UniProtKB: Q9CQZ6
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UniProt Group	Q9CQZ6
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	GA [auth B8], UB [auth b8]	186	Mus musculus	Mutation(s): 0 Gene Names: Ndufb8
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Find proteins for Q9D6J5 (Mus musculus) Explore Q9D6J5 Go to UniProtKB: Q9D6J5
IMPC: MGI:1914514
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UniProt Group	Q9D6J5
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	HA [auth B4], VB [auth b4]	129	Mus musculus	Mutation(s): 0 Gene Names: Ndufb4
UniProt
Find proteins for Q9CQC7 (Mus musculus) Explore Q9CQC7 Go to UniProtKB: Q9CQC7
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UniProt Group	Q9CQC7
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	IA [auth B9], WB [auth b9]	179	Mus musculus	Mutation(s): 0 Gene Names: Ndufb9
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Find proteins for Q9CQJ8 (Mus musculus) Explore Q9CQJ8 Go to UniProtKB: Q9CQJ8
IMPC: MGI:1913468
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UniProt Group	Q9CQJ8
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	JA [auth B7], XB [auth b7]	136	Mus musculus	Mutation(s): 0 Gene Names: Ndufb7
UniProt
Find proteins for Q9CR61 (Mus musculus) Explore Q9CR61 Go to UniProtKB: Q9CR61
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UniProt Group	Q9CR61
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	KA [auth BL], YB [auth bl]	176	Mus musculus	Mutation(s): 0 Gene Names: Ndufb10
UniProt
Find proteins for Q9DCS9 (Mus musculus) Explore Q9DCS9 Go to UniProtKB: Q9DCS9
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UniProt Group	Q9DCS9
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	LA [auth AN], ZB [auth an]	145	Mus musculus	Mutation(s): 0 Gene Names: Ndufa12
UniProt
Find proteins for Q7TMF3 (Mus musculus) Explore Q7TMF3 Go to UniProtKB: Q7TMF3
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UniProt Group	Q7TMF3
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	AC [auth a7], MA [auth A7]	112	Mus musculus	Mutation(s): 0 Gene Names: Ndufa7
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Find proteins for Q9Z1P6 (Mus musculus) Explore Q9Z1P6 Go to UniProtKB: Q9Z1P6
IMPC: MGI:1913666
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UniProt Group	Q9Z1P6
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial	BC [auth v3], NA [auth V3]	104	Mus musculus	Mutation(s): 0 Gene Names: Ndufv3
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Find proteins for Q8BK30 (Mus musculus) Explore Q8BK30 Go to UniProtKB: Q8BK30
IMPC: MGI:1890894
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UniProt Group	Q8BK30
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 1, mitochondrial	CC [auth 3A], MC [auth 3L]	446	Mus musculus	Mutation(s): 0 Gene Names: Uqcrc1
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Find proteins for Q9CZ13 (Mus musculus) Explore Q9CZ13 Go to UniProtKB: Q9CZ13
IMPC: MGI:107876
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UniProt Group	Q9CZ13
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 2, mitochondrial	DC [auth 3B], NC [auth 3M]	439	Mus musculus	Mutation(s): 0 Gene Names: Uqcrc2
UniProt
Find proteins for Q9DB77 (Mus musculus) Explore Q9DB77 Go to UniProtKB: Q9DB77
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UniProt Group	Q9DB77
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b	EC [auth 3C], OC [auth 3N]	380	Mus musculus	Mutation(s): 0 Gene Names: Mt-Cyb
UniProt
Find proteins for P00158 (Mus musculus) Explore P00158 Go to UniProtKB: P00158
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UniProt Group	P00158
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome c1, heme protein, mitochondrial	FC [auth 3D], PC [auth 3O]	241	Mus musculus	Mutation(s): 0 Gene Names: Cyc1 EC: 7.1.1.8
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Find proteins for Q9D0M3 (Mus musculus) Explore Q9D0M3 Go to UniProtKB: Q9D0M3
IMPC: MGI:1913695
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UniProt Group	Q9D0M3
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 9	GC [auth 3E], QC [auth 3P]	196	Mus musculus	Mutation(s): 0 Gene Names: Uqcrfs1 EC: 7.1.1.8
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Find proteins for Q9CR68 (Mus musculus) Explore Q9CR68 Go to UniProtKB: Q9CR68
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UniProt Group	Q9CR68
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 7	HC [auth 3F], RC [auth 3Q]	110	Mus musculus	Mutation(s): 0 Gene Names: Uqcrb
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Find proteins for Q9CQB4 (Mus musculus) Explore Q9CQB4 Go to UniProtKB: Q9CQB4
IMPC: MGI:1914780
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UniProt Group	Q9CQB4
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 8	IC [auth 3G], SC [auth 3R]	81	Mus musculus	Mutation(s): 0 Gene Names: Uqcrq
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IMPC: MGI:107807
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UniProt Group	Q9CQ69
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 6, mitochondrial	JC [auth 3H], TC [auth 3S]	76	Mus musculus	Mutation(s): 0 Gene Names: Uqcrh
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Find proteins for P99028 (Mus musculus) Explore P99028 Go to UniProtKB: P99028
IMPC: MGI:1913826
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UniProt Group	P99028
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 9	KC [auth 3J], VC [auth 3U]	63	Mus musculus	Mutation(s): 0 Gene Names: Uqcr10
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Find proteins for Q8R1I1 (Mus musculus) Explore Q8R1I1 Go to UniProtKB: Q8R1I1
IMPC: MGI:1913402
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UniProt Group	Q8R1I1
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit 10	LC [auth 3K], WC [auth 3V]	56	Mus musculus	Mutation(s): 0 Gene Names: Uqcr11, Uqcr
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Find proteins for Q9CPX8 (Mus musculus) Explore Q9CPX8 Go to UniProtKB: Q9CPX8
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UniProt Group	Q9CPX8
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytochrome b-c1 complex subunit Rieske, mitochondrial	UC [auth 3T]	78	Mus musculus	Mutation(s): 0 Gene Names: Uqcrfs1 EC: 7.1.1.8
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UniProt Group	Q9CR68
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	CD [auth v1], XC [auth V1]	457	Mus musculus	Mutation(s): 0 Gene Names: Ndufv1 EC: 7.1.1.2
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Find proteins for Q91YT0 (Mus musculus) Explore Q91YT0 Go to UniProtKB: Q91YT0
IMPC: MGI:107851
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UniProt Group	Q91YT0
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	DD [auth v2], YC [auth V2]	244	Mus musculus	Mutation(s): 0 Gene Names: Ndufv2 EC: 7.1.1.2
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Find proteins for Q9D6J6 (Mus musculus) Explore Q9D6J6 Go to UniProtKB: Q9D6J6
IMPC: MGI:1920150
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UniProt Group	Q9D6J6
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	ED [auth s1], ZC [auth S1]	716	Mus musculus	Mutation(s): 0 Gene Names: Ndufs1 EC: 7.1.1.2
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IMPC: MGI:2443241
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UniProt Group	Q91VD9
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	AD [auth S7], FD [auth s7]	224	Mus musculus	Mutation(s): 0 Gene Names: Ndufs7 EC: 7.1.1.2
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Find proteins for Q9DC70 (Mus musculus) Explore Q9DC70 Go to UniProtKB: Q9DC70
IMPC: MGI:1922656
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UniProt Group	Q9DC70
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	BD [auth S8], GD [auth s8]	212	Mus musculus	Mutation(s): 0 Gene Names: Ndufs8 EC: 7.1.1.2
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Find proteins for Q8K3J1 (Mus musculus) Explore Q8K3J1 Go to UniProtKB: Q8K3J1
IMPC: MGI:2385079
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UniProt Group	Q8K3J1
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Reference Sequence

Small Molecules

Ligands 10 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NDP Query on NDP Download Ideal Coordinates CCD File SDF format, chain JD [auth A9] SDF format, chain QD [auth a9] MOL2 format, chain JD [auth A9] MOL2 format, chain QD [auth a9] mmCIF format, chain JD [auth A9] mmCIF format, chain QD [auth a9]	JD [auth A9], QD [auth a9]	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₃₀ N₇ O₁₇ P₃ ACFIXJIJDZMPPO-NNYOXOHSSA-N		Interactions Focus chain JD [auth A9] Focus chain QD [auth a9] Interactions & Density Focus chain JD [auth A9] Focus chain QD [auth a9]
HEC Query on HEC Download Ideal Coordinates CCD File SDF format, chain VD [auth 3D] SDF format, chain YD [auth 3O] MOL2 format, chain VD [auth 3D] MOL2 format, chain YD [auth 3O] mmCIF format, chain VD [auth 3D] mmCIF format, chain YD [auth 3O]	VD [auth 3D], YD [auth 3O]	HEME C C₃₄ H₃₄ Fe N₄ O₄ HXQIYSLZKNYNMH-LJNAALQVSA-N		Interactions Focus chain VD [auth 3D] Focus chain YD [auth 3O] Interactions & Density Focus chain VD [auth 3D] Focus chain YD [auth 3O]
HEM Query on HEM Download Ideal Coordinates CCD File SDF format, chain TD [auth 3C] SDF format, chain UD [auth 3C] SDF format, chain WD [auth 3N] SDF format, chain XD [auth 3N] MOL2 format, chain TD [auth 3C] MOL2 format, chain UD [auth 3C] MOL2 format, chain WD [auth 3N] MOL2 format, chain XD [auth 3N] mmCIF format, chain TD [auth 3C] mmCIF format, chain UD [auth 3C] mmCIF format, chain WD [auth 3N] mmCIF format, chain XD [auth 3N]	TD [auth 3C], UD [auth 3C], WD [auth 3N], XD [auth 3N]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain TD [auth 3C] Focus chain UD [auth 3C] Focus chain WD [auth 3N] Focus chain XD [auth 3N] Interactions & Density Focus chain TD [auth 3C] Focus chain UD [auth 3C] Focus chain WD [auth 3N] Focus chain XD [auth 3N]
EHZ Query on EHZ Download Ideal Coordinates CCD File SDF format, chain LD [auth A6] SDF format, chain MD [auth B9] SDF format, chain ND [auth 5a] SDF format, chain SD [auth a6] MOL2 format, chain LD [auth A6] MOL2 format, chain MD [auth B9] MOL2 format, chain ND [auth 5a] MOL2 format, chain SD [auth a6] mmCIF format, chain LD [auth A6] mmCIF format, chain MD [auth B9] mmCIF format, chain ND [auth 5a] mmCIF format, chain SD [auth a6]	LD [auth A6], MD [auth B9], ND [auth 5a], SD [auth a6]	~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate C₂₅ H₄₉ N₂ O₉ P S JYSKQPQRUCZFIQ-REWPJTCUSA-N		Interactions Focus chain LD [auth A6] Focus chain MD [auth B9] Focus chain ND [auth 5a] Focus chain SD [auth a6] Interactions & Density Focus chain LD [auth A6] Focus chain MD [auth B9] Focus chain ND [auth 5a] Focus chain SD [auth a6]
DGT Query on DGT Download Ideal Coordinates CCD File SDF format, chain ID [auth AL] SDF format, chain PD [auth al] MOL2 format, chain ID [auth AL] MOL2 format, chain PD [auth al] mmCIF format, chain ID [auth AL] mmCIF format, chain PD [auth al]	ID [auth AL], PD [auth al]	2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₃ P₃ HAAZLUGHYHWQIW-KVQBGUIXSA-N		Interactions Focus chain ID [auth AL] Focus chain PD [auth al] Interactions & Density Focus chain ID [auth AL] Focus chain PD [auth al]
FMN Query on FMN Download Ideal Coordinates CCD File SDF format, chain IE [auth v1] SDF format, chain ZD [auth V1] MOL2 format, chain IE [auth v1] MOL2 format, chain ZD [auth V1] mmCIF format, chain IE [auth v1] mmCIF format, chain ZD [auth V1]	IE [auth v1], ZD [auth V1]	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Interactions Focus chain IE [auth v1] Focus chain ZD [auth V1] Interactions & Density Focus chain IE [auth v1] Focus chain ZD [auth V1]
SF4 Query on SF4 Download Ideal Coordinates CCD File SDF format, chain AE [auth V1] SDF format, chain CE [auth S1] SDF format, chain DE [auth S1] SDF format, chain FE [auth S7] SDF format, chain GE [auth S8] SDF format, chain HE [auth S8] SDF format, chain JE [auth v1] SDF format, chain LE [auth s1] SDF format, chain ME [auth s1] SDF format, chain OE [auth s7] SDF format, chain PE [auth s8] SDF format, chain QE [auth s8] MOL2 format, chain AE [auth V1] MOL2 format, chain CE [auth S1] MOL2 format, chain DE [auth S1] MOL2 format, chain FE [auth S7] MOL2 format, chain GE [auth S8] MOL2 format, chain HE [auth S8] MOL2 format, chain JE [auth v1] MOL2 format, chain LE [auth s1] MOL2 format, chain ME [auth s1] MOL2 format, chain OE [auth s7] MOL2 format, chain PE [auth s8] MOL2 format, chain QE [auth s8] mmCIF format, chain AE [auth V1] mmCIF format, chain CE [auth S1] mmCIF format, chain DE [auth S1] mmCIF format, chain FE [auth S7] mmCIF format, chain GE [auth S8] mmCIF format, chain HE [auth S8] mmCIF format, chain JE [auth v1] mmCIF format, chain LE [auth s1] mmCIF format, chain ME [auth s1] mmCIF format, chain OE [auth s7] mmCIF format, chain PE [auth s8] mmCIF format, chain QE [auth s8]	AE [auth V1] CE [auth S1] DE [auth S1] FE [auth S7] GE [auth S8] AE [auth V1], CE [auth S1], DE [auth S1], FE [auth S7], GE [auth S8], HE [auth S8], JE [auth v1], LE [auth s1], ME [auth s1], OE [auth s7], PE [auth s8], QE [auth s8]	IRON/SULFUR CLUSTER Fe₄ S₄ LJBDFODJNLIPKO-UHFFFAOYSA-N		Interactions Focus chain AE [auth V1] Focus chain CE [auth S1] Focus chain DE [auth S1] Focus chain FE [auth S7] Focus chain GE [auth S8] Focus chain HE [auth S8] Focus chain JE [auth v1] Focus chain LE [auth s1] Focus chain ME [auth s1] Focus chain OE [auth s7] Focus chain PE [auth s8] Focus chain QE [auth s8] Interactions & Density Focus chain AE [auth V1] Focus chain CE [auth S1] Focus chain DE [auth S1] Focus chain FE [auth S7] Focus chain GE [auth S8] Focus chain HE [auth S8] Focus chain JE [auth v1] Focus chain LE [auth s1] Focus chain ME [auth s1] Focus chain OE [auth s7] Focus chain PE [auth s8] Focus chain QE [auth s8]
FES Query on FES Download Ideal Coordinates CCD File SDF format, chain BE [auth V2] SDF format, chain EE [auth S1] SDF format, chain KE [auth v2] SDF format, chain NE [auth s1] MOL2 format, chain BE [auth V2] MOL2 format, chain EE [auth S1] MOL2 format, chain KE [auth v2] MOL2 format, chain NE [auth s1] mmCIF format, chain BE [auth V2] mmCIF format, chain EE [auth S1] mmCIF format, chain KE [auth v2] mmCIF format, chain NE [auth s1]	BE [auth V2], EE [auth S1], KE [auth v2], NE [auth s1]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Interactions Focus chain BE [auth V2] Focus chain EE [auth S1] Focus chain KE [auth v2] Focus chain NE [auth s1] Interactions & Density Focus chain BE [auth V2] Focus chain EE [auth S1] Focus chain KE [auth v2] Focus chain NE [auth s1]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain KD [auth S6] SDF format, chain RD [auth s6] MOL2 format, chain KD [auth S6] MOL2 format, chain RD [auth s6] mmCIF format, chain KD [auth S6] mmCIF format, chain RD [auth s6]	KD [auth S6], RD [auth s6]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain KD [auth S6] Focus chain RD [auth s6] Interactions & Density Focus chain KD [auth S6] Focus chain RD [auth s6]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain HD [auth AL] SDF format, chain OD [auth al] MOL2 format, chain HD [auth AL] MOL2 format, chain OD [auth al] mmCIF format, chain HD [auth AL] mmCIF format, chain OD [auth al]	HD [auth AL], OD [auth al]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain HD [auth AL] Focus chain OD [auth al] Interactions & Density Focus chain HD [auth AL] Focus chain OD [auth al]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
2MR Query on 2MR	C [auth S2], QA [auth s2]	L-PEPTIDE LINKING	C₈ H₁₈ N₄ O₂		ARG
FME Query on FME	D [auth 1], RA [auth 1a]	L-PEPTIDE LINKING	C₆ H₁₁ N O₃ S		MET

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2025-01-15

Deposition Author(s):

Letts, J.A.

Padavannil, A.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM137929

Revision History (Full details and data files)

Version 1.0: 2025-01-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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