Biochemical Investigation of the Enzymes Required for the Production of 2,3,4-triacetoamido-2,3,4-trideoxy-l-arabinose in Psychrobacter cryohalolentis K5
Bockhaus, N.J., Dunsirn, M.M., Thoden, J.B., Holden, H.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DegT/DnrJ/EryC1/StrS aminotransferase | 380 | Psychrobacter cryohalolentis K5 | Mutation(s): 0  Gene Names: Pcryo_0618 | ||
UniProt | |||||
Find proteins for Q1QD52 (Psychrobacter cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)) Explore Q1QD52  Go to UniProtKB:  Q1QD52 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q1QD52 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PDG (Subject of Investigation/LOI) Query on PDG | M [auth B], V [auth C], Y [auth D] | N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-GLUTAMIC ACID C13 H19 N2 O9 P JMRKOGDJNHPMHS-SNVBAGLBSA-N | |||
A1ADI Query on A1ADI | F [auth A], N [auth B], O [auth B] | 2,2'-(1,4-diazepane-1,4-diyl)di(ethane-1-sulfonic acid) C9 H20 N2 O6 S2 QZTMPPUJIVQNKS-UHFFFAOYSA-N | |||
PMP (Subject of Investigation/LOI) Query on PMP | E [auth A] | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C8 H13 N2 O5 P ZMJGSOSNSPKHNH-UHFFFAOYSA-N | |||
EDO Query on EDO | H [auth A] I [auth A] J [auth A] K [auth A] Q [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A], P [auth B], W [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | L [auth A], T [auth B], Z [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA Query on NA | AA [auth D], U [auth B], X [auth C] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 131.493 | α = 90 |
b = 159.822 | β = 90 |
c = 115.864 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
SAINT | data reduction |
SADABS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM134643 |