Download MendeleyCrystal structure of iron-bound ovotransferrin N-lobe at atomic resolution
Toyoda, M., Tanabe, A., Mikami, B., Hirose, M., Mizutani, K.To be published.
8X3H
Crystal structure of iron-bound recombinant ovotransferrin N-lobe at 0.93 angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb8X3H/pdb
- Classification: METAL TRANSPORT
- Organism(s): Gallus gallus
- Expression System: Komagataella pastoris
- Mutation(s): No
- Deposited: 2023-11-13 Released: 2023-12-13
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.124
- R-Value Work: 0.103
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ovotransferrin | 332 | Gallus gallus | Mutation(s): 0 Gene Names: TFEW |  | |
UniProt | |||||
Find proteins for P02789 (Gallus gallus) Explore P02789 Go to UniProtKB: P02789 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02789 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CO3 (Subject of Investigation/LOI) Query on CO3 | C [auth A] | CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L |  | ||
| FE (Subject of Investigation/LOI) Query on FE | B [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.124
- R-Value Work: 0.103
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.346 | α = 90 |
| b = 75.518 | β = 90 |
| c = 84.647 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELXL | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-13 Deposition Author(s): Toyoda, M., Mikami, B., Mizutani, K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-12-13
Type: Initial release - Version 1.1: 2024-11-20
Changes: Structure summary
