Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyUberolysin-like 8024947 4001060 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCircular bacteriocins 8037326 3000616 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyCircular bacteriocins 8037326 3000616 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCircular bacteriocins 8037326 3000616 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCircular bacteriocins 8037326 3000616 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ABacteriocin_IIde1o82A1 A: alpha arraysX: Saposin-likeH: Bacteriocin AS-48-related (From Topology)T: Bacteriocin AS-48-relatedF: Bacteriocin_IIdECOD (1.6)
BBacteriocin_IIde1o82B1 A: alpha arraysX: Saposin-likeH: Bacteriocin AS-48-related (From Topology)T: Bacteriocin AS-48-relatedF: Bacteriocin_IIdECOD (1.6)
CBacteriocin_IIde1o82C1 A: alpha arraysX: Saposin-likeH: Bacteriocin AS-48-related (From Topology)T: Bacteriocin AS-48-relatedF: Bacteriocin_IIdECOD (1.6)
DBacteriocin_IIde1o82D1 A: alpha arraysX: Saposin-likeH: Bacteriocin AS-48-related (From Topology)T: Bacteriocin AS-48-relatedF: Bacteriocin_IIdECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.225.10 Mainly Alpha Up-down Bundle Bacteriocin As-48 Chain ACATH (4.3.0)
B1.20.225.10 Mainly Alpha Up-down Bundle Bacteriocin As-48 Chain ACATH (4.3.0)
C1.20.225.10 Mainly Alpha Up-down Bundle Bacteriocin As-48 Chain ACATH (4.3.0)
D1.20.225.10 Mainly Alpha Up-down Bundle Bacteriocin As-48 Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF09221Bacteriocin class IId cyclical uberolysin-like (Bacteriocin_IId)Bacteriocin class IId cyclical uberolysin-likeMembers of this family are membrane-interacting peptides, produced by Firmicutes that display a broad anti-microbial spectrum against Gram-positive and Gram-negative bacteria. They adopt a helical structure, with four or five alpha helices forming a ...Members of this family are membrane-interacting peptides, produced by Firmicutes that display a broad anti-microbial spectrum against Gram-positive and Gram-negative bacteria. They adopt a helical structure, with four or five alpha helices forming a Saposin-like fold [2,5]. The structure has been found to be cyclical [1, 3, 5]. It should be pointed out that one reference [4] implies that both circularin A and gassericin A are class V or IIc-type bacteriocins; however we find that these two proteins fall into different Pfam families families, this one and BacteriocIIc_cy, Pfam:PF12173.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR009086Bacteriocin AS-48Homologous Superfamily
A, B, C, D
IPR020038Circular bacteriocinFamily

Membrane Protein Annotation: OPM OPM Database Homepage