1W55
Structure of the Bifunctional IspDF from Campylobacter jejuni
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1w55a1 | Alpha and beta proteins (a/b) | Nucleotide-diphospho-sugar transferases | Nucleotide-diphospho-sugar transferases | Cytidylytransferase | IspD/IspF bifunctional enzyme, CDP-me synthase domain | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
A | d1w55a2 | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | IpsF-like | IspD/ispF bifunctional enzyme, MECDP synthase domain | (Campylobacter jejuni ) [TaxId: 197 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cytidylytransferase | 8030891 | 4002789 | SCOP2 (2022-06-29) |
A | SCOP2 Family | IpsF-like | 8030893 | 4003475 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Nucleotide-diphospho-sugar transferases | 8043270 | 3000077 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | IpsF-like | 8043272 | 3000926 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | YgbB | e1w55A1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
A | IspD | e1w55A2 | A: a/b three-layered sandwiches | X: Nucleotide-diphospho-sugar transferases (From Topology) | H: Nucleotide-diphospho-sugar transferases (From Topology) | T: Nucleotide-diphospho-sugar transferases | F: IspD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.550.10 | Alpha Beta | Alpha-Beta Complex | Spore Coat Polysaccharide Biosynthesis Protein SpsA | Chain A | CATH (4.3.0) |
A | 3.30.1330.50 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01128 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - | Family | |
PF02542 | YgbB family (YgbB) | YgbB family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036571 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily | Homologous Superfamily | |
IPR026596 | Bifunctional enzyme IspD/IspF | Family | |
IPR018294 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site | Conserved Site | |
IPR003526 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Domain | |
IPR020555 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site | Conserved Site | |
IPR001228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Family | |
IPR034683 | Cytidylyltransferase IspD/TarI | Family | |
IPR029044 | Nucleotide-diphospho-sugar transferases | Homologous Superfamily |