2D3Q
Crystal Structure of a Decolorizing Peroxidase (DyP) That Catalyses the Biological Oxidation of Anthraquinone Derivatives
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2d3qa1 | Alpha and beta proteins (a+b) | Ferredoxin-like | Dimeric alpha+beta barrel | Dyp-type peroxidase-like | Decolorizing peroxidase DyP | (Bjerkandera adusta ) [TaxId: 5331 ], | SCOPe (2.08) |
B | d2d3qb_ | Alpha and beta proteins (a+b) | Ferredoxin-like | Dimeric alpha+beta barrel | Dyp-type peroxidase-like | automated matches | (Bjerkandera adusta ) [TaxId: 5331 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | DyP-type peroxidase-like | 8027165 | 4003595 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Dimeric alpha+beta barrel | 8090936 | 3000089 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Dimeric alpha+beta barrel | 8039544 | 3000089 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Dimeric alpha+beta barrel | 8090936 | 3000089 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Dimeric alpha+beta barrel | 8039544 | 3000089 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Dyp_perox_N | e2d3qA3 | A: a+b two layers | X: Alpha-beta plaits | H: Dimeric alpha+beta barrel (From Topology) | T: Dimeric alpha+beta barrel | F: Dyp_perox_N | ECOD (1.6) |
A | Dyp_perox_C | e2d3qA2 | A: a+b two layers | X: Alpha-beta plaits | H: Dimeric alpha+beta barrel (From Topology) | T: Dimeric alpha+beta barrel | F: Dyp_perox_C | ECOD (1.6) |
B | Dyp_perox_N | e2d3qB2 | A: a+b two layers | X: Alpha-beta plaits | H: Dimeric alpha+beta barrel (From Topology) | T: Dimeric alpha+beta barrel | F: Dyp_perox_N | ECOD (1.6) |
B | Dyp_perox_C | e2d3qB1 | A: a+b two layers | X: Alpha-beta plaits | H: Dimeric alpha+beta barrel (From Topology) | T: Dimeric alpha+beta barrel | F: Dyp_perox_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20628 | Dyp-type peroxidase, C-terminal (Dyp_perox_C) | Dyp-type peroxidase, C-terminal | Dyp-type (dye-decolorizing) peroxidases are a family of heme proteins found in a wide range of bacteria and fungi [1,2]. They have a wide substrate specificity and lack homology to most other peroxidases, with the ability to function well under much ... | Domain | |
PF21105 | DyP dimeric alpha+beta barrel domain (DyP_N) | DyP dimeric alpha+beta barrel domain | This entry represents the N-terminal dimeric alpha beta barrel domain from the dye-decolorizing peroxidase (DyP)-type peroxidase family. This is one of the six families of peroxidases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Decolorizing Peroxidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR049509 | DyP dimeric alpha+beta barrel domain | Domain | |
IPR006314 | Dyp-type peroxidase | Family | |
IPR048328 | Dyp-type peroxidase, C-terminal domain | Domain | |
IPR011008 | Dimeric alpha-beta barrel | Homologous Superfamily |