2PXR
Crystal Structure of HIV-1 CA146 in the Presence of CAP-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | d2pxrc_ | All alpha proteins | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | Retrovirus capsid protein, N-terminal core domain | automated matches | (Human immunodeficiency virus 1 ) [TaxId: 11676 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2 Family | Retrovirus capsid protein, N-terminal core domain | 8023743 | 4001095 | SCOP2 (2022-06-29) |
A [auth C] | SCOP2 Superfamily | Retrovirus capsid protein, N-terminal core domain | 8036123 | 3000745 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Gag_p24_N | e2pxrC1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: Gag_p24_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C] | PF00607 | gag protein p24 N-terminal domain (Gag_p24) | gag protein p24 N-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C] | IPR000071 | Immunodeficiency lentiviral matrix, N-terminal | Domain |
A [auth C] | IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain |
A [auth C] | IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily |
A [auth C] | IPR050195 | Primate lentivirus group Gag polyprotein-like | Domain |
A [auth C] | IPR001878 | Zinc finger, CCHC-type | Domain |
A [auth C] | IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily |
A [auth C] | IPR010999 | Retroviral matrix protein | Homologous Superfamily |
A [auth C] | IPR012344 | Matrix protein, lentiviral and alpha-retroviral, N-terminal | Homologous Superfamily |
A [auth C] | IPR014817 | Gag protein p6 | Domain |
A [auth C] | IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |