2YPT
Crystal structure of the human nuclear membrane zinc metalloprotease ZMPSTE24 mutant (E336A) in complex with a synthetic CSIM tetrapeptide from the C-terminus of prelamin A
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8049050 | 3001975 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8049050 | 3001975 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8049050 | 3001975 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Metalloproteases (zincins), catalytic domain | 8049050 | 3001975 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M48 | e2yptA1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M48 | ECOD (1.6) |
B | Peptidase_M48 | e2yptB1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M48 | ECOD (1.6) |
C [auth D] | Peptidase_M48 | e2yptD1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M48 | ECOD (1.6) |
D [auth E] | Peptidase_M48 | e2yptE1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M48 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.2010.10 | Alpha Beta | 2-Layer Sandwich | Zincin-like | Metalloproteases ("zincins"), catalytic domain | CATH (4.3.0) |
B | 3.30.2010.10 | Alpha Beta | 2-Layer Sandwich | Zincin-like | Metalloproteases ("zincins"), catalytic domain | CATH (4.3.0) |
C [auth D] | 3.30.2010.10 | Alpha Beta | 2-Layer Sandwich | Zincin-like | Metalloproteases ("zincins"), catalytic domain | CATH (4.3.0) |
D [auth E] | 3.30.2010.10 | Alpha Beta | 2-Layer Sandwich | Zincin-like | Metalloproteases ("zincins"), catalytic domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B, C [auth D], D [auth E] | PF16491 | CAAX prenyl protease N-terminal, five membrane helices (Peptidase_M48_N) | CAAX prenyl protease N-terminal, five membrane helices | The five N-terminal five transmembrane alpha-helices of peptidase_M48 family proteins including the CAAX prenyl proteases reside completely within the membrane of the endoplasmic reticulum. | Domain |
A, B, C [auth D], D [auth E] | PF01435 | Peptidase family M48 (Peptidase_M48) | Peptidase family M48 | Peptidase_M48 is the largely extracellular catalytic region of CAAX prenyl protease homologues such as Human FACE-1 protease. These are metallopeptidases, with the characteristic HExxH motif giving the two histidine-zinc-ligands and an adjacent gluta ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Intramembrane Proteases | CAAX protease ZMPSTE24 |