3D87
Crystal structure of Interleukin-23
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d3d87b1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | I set domains | The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d3d87b2 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3d87d1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | I set domains | The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d3d87d2 | All beta proteins | Immunoglobulin-like beta-sandwich | Fibronectin type III | Fibronectin type III | The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Long-chain cytokines | 8045915 | 4000851 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | 4-helical cytokines | 8092382 | 3001717 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | 4-helical cytokines | 8092382 | 3001717 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Fibronectin type III | 8055151 | 3002063 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054841 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Fibronectin type III | 8055537 | 3002063 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054841 | 3000071 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Fibronectin type III | 8055151 | 3002063 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Fibronectin type III | 8055537 | 3002063 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IL6 | e3d87A2 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: IL6 | ECOD (1.6) |
C | IL6 | e3d87C3 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: 4-helical cytokines (From Topology) | T: 4-helical cytokines | F: IL6 | ECOD (1.6) |
B | IL12p40_C | e3d87B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: IL12p40_C | ECOD (1.6) |
B | Ig_5 | e3d87B3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ig_5 | ECOD (1.6) |
B | fn3_6 | e3d87B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_6 | ECOD (1.6) |
D | IL12p40_C | e3d87D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: IL12p40_C | ECOD (1.6) |
D | Ig_5 | e3d87D3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ig_5 | ECOD (1.6) |
D | fn3_6 | e3d87D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: fn3_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1250.10 | Mainly Alpha | Up-down Bundle | Growth Hormone | Chain: A | CATH (4.3.0) |
C | 1.20.1250.10 | Mainly Alpha | Up-down Bundle | Growth Hormone | Chain: A | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16649 | Interleukin 23 subunit alpha (IL23) | Interleukin 23 subunit alpha | This family, interleukin 23 subunit alpha, is a heterodimer consisting of a 40 kDa subunit - p40 - that is shared with IL12 and a unique 19 kDa subunit - p19. IL23 is a pro-inflammatory cytokine that binds to adnectins and thus plays a key role in th ... | Domain | |
PF10420 | Cytokine interleukin-12p40 C-terminus (IL12p40_C) | Cytokine interleukin-12p40 C-terminus | IL12p40_C is the largely beta stranded C-terminal, D3, domain of interleukin-12p40 or interleukin-12B. This interleukin is produced on stimulation by macrophage-engulfed micro-organisms and other stimuli, when it dimerises with interleukin-12p35 to f ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009079 | Four-helical cytokine-like, core | Homologous Superfamily | |
IPR010831 | Interleukin-23 alpha | Family | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR003530 | Long hematopoietin receptor, soluble alpha chain, conserved site | Conserved Site | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR007110 | Immunoglobulin-like domain | Domain | |
IPR003598 | Immunoglobulin subtype 2 | Domain | |
IPR050676 | Interleukin-12 | Family | |
IPR019482 | Interleukin-12 beta, central domain | Domain | |
IPR015528 | Interleukin-12 beta | Family | |
IPR003961 | Fibronectin type III | Domain | |
IPR036116 | Fibronectin type III superfamily | Homologous Superfamily |