3GT5

Crystal structure of an N-acetylglucosamine 2-epimerase family protein from Xylella fastidiosa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3gt5a1	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	automated matches	automated matches	(Xylella fastidiosa M23 ) [TaxId: 405441 ],	SCOPe (2.08)
A	d3gt5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Xylella fastidiosa M23 ) [TaxId: 405441 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	N-acylglucosamine (NAG) epimerase	8097247	4001174	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Six-hairpin glycosidases	8097248	3000970	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	GlcNAc_2-epim	e3gt5A1	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: GlcNAc_2-epim	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF07221	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) (GlcNAc_2-epim)	N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	N-acetylglucosamine 2-epimerase	isomerase activity catalytic activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A	IPR010819	N-acylglucosamine 2-epimerase/Cellobiose 2-epimerase	Family
A	IPR034116	AGE domain	Domain
A	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.