3MA0
Closed liganded crystal structure of xylose binding protein from Escherichia coli
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3ma0a1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | automated matches | automated matches | (Escherichia coli str. K-12 substr. MG1655 ) [TaxId: 511145 ], | SCOPe (2.08) |
A | d3ma0a2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Escherichia coli str. K-12 substr. MG1655 ) [TaxId: 511145 ], | SCOPe (2.08) |
B | d3ma0b_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | automated matches | automated matches | (Escherichia coli str. K-12 substr. MG1655 ) [TaxId: 511145 ], | SCOPe (2.08) |
C | d3ma0c_ | Alpha and beta proteins (a/b) | Periplasmic binding protein-like I | Periplasmic binding protein-like I | automated matches | automated matches | (Escherichia coli str. K-12 substr. MG1655 ) [TaxId: 511145 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | L-arabinose binding protein-like | 8098643 | 4000206 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Type 1 solute binding protein-like | 8098644 | 3000125 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Type 1 solute binding protein-like | 8098644 | 3000125 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Type 1 solute binding protein-like | 8098644 | 3000125 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peripla_BP_1_1st | e3ma0A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_1_1st | ECOD (1.6) |
A | Peripla_BP_4_C | e3ma0A2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_C | ECOD (1.6) |
B | Peripla_BP_1_1st | e3ma0B2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_1_1st | ECOD (1.6) |
B | Peripla_BP_4_C | e3ma0B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_C | ECOD (1.6) |
C | Peripla_BP_1_1st | e3ma0C2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_1_1st | ECOD (1.6) |
C | Peripla_BP_4_C | e3ma0C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Periplasmic binding protein-like I | F: Peripla_BP_4_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
B | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
C | 3.40.50.2300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Response regulator | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13407 | Periplasmic binding protein domain (Peripla_BP_4) | Periplasmic binding protein domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR025997 | Periplasmic binding protein | Domain | |
IPR013456 | D-xylose-binding periplasmic protein | Family | |
IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily | |
IPR050555 | Bacterial Solute-Binding Protein 2 | Family |