3RUN
New strategy to analyze structures of glycopeptide antibiotic-target complexes
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3runa_ | Alpha and beta proteins (a+b) | Lysozyme-like | Lysozyme-like | Phage lysozyme | Phage T4 lysozyme | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.530.40 | Mainly Alpha | Orthogonal Bundle | Lysozyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00959 | Phage lysozyme (Phage_lysozyme) | Phage lysozyme | This family includes lambda phage lysozyme and E. coli endolysin. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR052619 | Bacteriophage lysozyme-like | Family | |
IPR001165 | T4-type lysozyme | Family | |
IPR034690 | Endolysin T4 type | Family | |
IPR002196 | Glycoside hydrolase, family 24 | Family | |
IPR023347 | Lysozyme domain superfamily | Homologous Superfamily | |
IPR023346 | Lysozyme-like domain superfamily | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
CCS | Parent Component: CYS | |
DAL | AA0111 , AA0191 :  meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 | :  |
3FG | AA0111 , AA0191 | :  |
GHP | AA0111 , AA0191 | :  |
MLU | AA0111 , AA0191 | :  |
OMY | Parent Component: TYR :  AA0111 , AA0191 | |
OMZ | AA0111 , AA0191 | :