4K2B
Crystal structure of ntda from bacillus subtilis in complex with the internal aldimine
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DegT_DnrJ_EryC1 | e4k2bA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: DegT_DnrJ_EryC1 | ECOD (1.6) |
A | EUF08651 | e4k2bA2 | A: a/b three-layered sandwiches | X: N-terminal domain in NTD biosynthesis operon protein NtdA (From Topology) | H: N-terminal domain in NTD biosynthesis operon protein NtdA (From Topology) | T: N-terminal domain in NTD biosynthesis operon protein NtdA | F: EUF08651 | ECOD (1.6) |
A | Aminotran_5_N | e4k2bA3 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
B | DegT_DnrJ_EryC1 | e4k2bB3 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: DegT_DnrJ_EryC1 | ECOD (1.6) |
B | EUF08651 | e4k2bB2 | A: a/b three-layered sandwiches | X: N-terminal domain in NTD biosynthesis operon protein NtdA (From Topology) | H: N-terminal domain in NTD biosynthesis operon protein NtdA (From Topology) | T: N-terminal domain in NTD biosynthesis operon protein NtdA | F: EUF08651 | ECOD (1.6) |
B | Aminotran_5_N | e4k2bB1 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
A | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
B | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
B | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01041 | DegT/DnrJ/EryC1/StrS aminotransferase family (DegT_DnrJ_EryC1) | DegT/DnrJ/EryC1/StrS aminotransferase family | The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA Swiss:P72454, StsC Swiss:P77952 and StsS [1]. The aminotransferase activity was demons ... | Domain | |
PF22127 | NTD biosynthesis operon protein NtdA, N-terminal domain (NtdA_N) | NTD biosynthesis operon protein NtdA, N-terminal domain | This entry represents the N-terminal domain of NtdA, which is not found in other aminotransferases and consists of two-stranded parallel beta-sheet flanked by two alpha-helices [1]. This domain may be involved in protein-protein interactions. NtdA is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
NTD biosynthesis operon protein NtdA |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR000653 | DegT/DnrJ/EryC1/StrS aminotransferase | Family | |
IPR054367 | Oxo-glucose-6-phosphate:glutamate aminotransferase, N-terminal domain | Domain | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |