4LM6
Light harvesting complex PC612 from the cryptophyte Hemiselmis virescens M1635
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4lm6b_ | All alpha proteins | Globin-like | Globin-like | Phycocyanin-like phycobilisome proteins | automated matches | (Hemiselmis virescens ) [TaxId: 77927 ], | SCOPe (2.08) |
D | d4lm6d_ | All alpha proteins | Globin-like | Globin-like | Phycocyanin-like phycobilisome proteins | automated matches | (Hemiselmis virescens ) [TaxId: 77927 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2 Family | Phycocyanin-like phycobilisome proteins | 8064819 | 4000579 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Globin-like | 8064820 | 3000554 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Globin-like | 8064820 | 3000554 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Phycoerythr_ab | e4lm6A1 | A: extended segments | X: Phycoerythrin 545 alpha-subunits (From Topology) | H: Phycoerythrin 545 alpha-subunits (From Topology) | T: Phycoerythrin 545 alpha-subunits | F: Phycoerythr_ab | ECOD (1.6) |
C | Phycoerythr_ab | e4lm6C1 | A: extended segments | X: Phycoerythrin 545 alpha-subunits (From Topology) | H: Phycoerythrin 545 alpha-subunits (From Topology) | T: Phycoerythrin 545 alpha-subunits | F: Phycoerythr_ab | ECOD (1.6) |
B | Phycobilisome | e4lm6B1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Phycobilisome | ECOD (1.6) |
D | Phycobilisome | e4lm6D1 | A: alpha arrays | X: Globin-like (From Topology) | H: Globin-like (From Topology) | T: Globin-like | F: Phycobilisome | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.510.10 | Alpha Beta | Alpha-Beta Complex | Cryptophytan Phycoerythrin (Alpha-1 Chain) | Chain A | CATH (4.3.0) |
C | 3.90.510.10 | Alpha Beta | Alpha-Beta Complex | Cryptophytan Phycoerythrin (Alpha-1 Chain) | Chain A | CATH (4.3.0) |
B | 1.10.490.20 | Mainly Alpha | Orthogonal Bundle | Globin-like | Phycocyanins | CATH (4.3.0) |
D | 1.10.490.20 | Mainly Alpha | Orthogonal Bundle | Globin-like | Phycocyanins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00502 | Phycobilisome protein (Phycobilisome) | Phycobilisome protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037011 | Phycoerythrin-like alpha chain superfamily | Homologous Superfamily | |
IPR011070 | Globular protein, non-globular alpha/beta subunit | Homologous Superfamily | |
IPR038719 | Phycobilisome, alpha/beta subunit superfamily | Homologous Superfamily | |
IPR009050 | Globin-like superfamily | Homologous Superfamily | |
IPR012128 | Phycobilisome, alpha/beta subunit | Family |