Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d4mngb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
C [auth D]d4mngd_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) beta2-microglobulin Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth A]d4mnga2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth A]d4mnga1 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain automated matches (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth A]d4mnga3 Artifacts Tags Tags Tags C-terminal Tags (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth C]d4mngc2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth C]d4mngc1 Alpha and beta proteins (a+b) MHC antigen-recognition domain MHC antigen-recognition domain MHC antigen-recognition domain automated matches (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth C]d4mngc3 Artifacts Tags Tags Tags C-terminal Tags (Mus musculus ) [TaxId: 10090 ], Mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
Ed4mnge1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd4mngf1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches Human (Homo sapiens ) [TaxId: 9606 ], human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054571 3000071 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054657 3000071 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyMHC antigen-recognition domain 8035878 3000521 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054657 3000071 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyMHC antigen-recognition domain 8035878 3000521 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]C1-set_2e4mngB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
C [auth D]C1-set_2e4mngD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
B [auth A]C1-set_2e4mngA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
B [auth A]MHC_Ie4mngA2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: MHC_IECOD (1.6)
D [auth C]C1-set_2e4mngC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_2ECOD (1.6)
D [auth C]MHC_Ie4mngC2 A: a+b two layersX: MHC antigen-recognition domain (From Topology)H: MHC antigen-recognition domain (From Topology)T: MHC antigen-recognition domainF: MHC_IECOD (1.6)
EV-set_3e4mngE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)
EV-set_4e4mngE1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_4ECOD (1.6)
FV-set_3e4mngF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_3ECOD (1.6)
FV-set_4e4mngF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
A [auth B],
C [auth D]
CD1D B2M Mus musculus (house mouse) B2M*01 C-LIKE-DOMAIN C-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202444-0)
B [auth A],
D [auth C]
CD1D I-ALPHA-LIKE Mus musculus (house mouse) CD1D*01 G-DOMAIN G-ALPHA1-LIKE, G-DOMAIN G-ALPHA2-LIKE RPI-MH1Like MH1LIKE-ALPHA-LIKE_B2M IMGT (202444-0)
E, F
TR scFv delta_gamma TRDV1*01, TRGV4*01, anti-sulfatide-CD1D SCFV-DELTA-GAMMA Homo sapiens (human) TRDV1*01, TRDJ1*01, TRGV4*01, TRGV4*02, TRGJ1*01, TRGJ2*01 V-DOMAIN V-DELTA, V-DOMAIN V-GAMMA TR SCFV-DELTA-GAMMA IMGT (202444-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
C [auth D]
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
B [auth A],
D [auth C]
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domain- Domain
E, F
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
C [auth D]
Beta-2-microglobulin
B [auth A],
D [auth C]
Cd1d1 protein
E, F
TRA@ protein,TRA@ protein, Ti antigen CD3-associated protein gamma chain V-J-C region- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
C [auth D]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A [auth B],
C [auth D]
IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth B],
C [auth D]
IPR007110Immunoglobulin-like domainDomain
A [auth B],
C [auth D]
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
A [auth B],
C [auth D]
IPR003597Immunoglobulin C1-setDomain
A [auth B],
C [auth D]
IPR015707Beta-2-MicroglobulinFamily
B [auth A],
D [auth C]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
B [auth A],
D [auth C]
IPR003597Immunoglobulin C1-setDomain
B [auth A],
D [auth C]
IPR011161MHC class I-like antigen recognition-likeDomain
B [auth A],
D [auth C]
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
B [auth A],
D [auth C]
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth A],
D [auth C]
IPR007110Immunoglobulin-like domainDomain
B [auth A],
D [auth C]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
B [auth A],
D [auth C]
IPR003597Immunoglobulin C1-setDomain
B [auth A],
D [auth C]
IPR011161MHC class I-like antigen recognition-likeDomain
B [auth A],
D [auth C]
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
B [auth A],
D [auth C]
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR013783Immunoglobulin-like foldHomologous Superfamily
B [auth A],
D [auth C]
IPR007110Immunoglobulin-like domainDomain
E, F
IPR003597Immunoglobulin C1-setDomain
E, F
IPR013783Immunoglobulin-like foldHomologous Superfamily
E, F
IPR051755Immunoglobulin-like Cell Surface ReceptorFamily
E, F
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E, F
IPR013106Immunoglobulin V-set domainDomain
E, F
IPR003599Immunoglobulin domain subtypeDomain
E, F
IPR007110Immunoglobulin-like domainDomain