Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyClp1 C-terminal domain-like 8091492 3002513 SCOP2B (2022-06-29)
ASCOP2B SuperfamilycAMP-binding domain-like 8091494 3000084 SCOP2B (2022-06-29)
ASCOP2B SuperfamilySimibi-like P-loop NTPases 8091493 3002018 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AClp1e4ohzA2 A: beta barrelsX: Protein CLP1 C-terminal domain (From Topology)H: Protein CLP1 C-terminal domain (From Topology)T: Protein CLP1 C-terminal domainF: Clp1ECOD (1.6)
ACLP1_Ne4ohzA3 A: beta sandwichesX: jelly-rollH: Protein CLP1 jelly-roll domain (From Topology)T: Protein CLP1 jelly-roll domainF: CLP1_NECOD (1.6)
ACLP1_Pe4ohzA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: CLP1_PECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.1030 Mainly Beta Sandwich Jelly Rolls Clp1, DNA binding domainCATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A2.40.30.330 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06807Pre-mRNA cleavage complex II protein Clp1 (Clp1)Pre-mRNA cleavage complex II protein Clp1- Family
PF16573N-terminal beta-sandwich domain of polyadenylation factor (CLP1_N)N-terminal beta-sandwich domain of polyadenylation factor- Family
PF16575mRNA cleavage and polyadenylation factor CLP1 P-loop (CLP1_P)mRNA cleavage and polyadenylation factor CLP1 P-loopCLP1_P is the P-loop carrying domain of Clp1 mRNA cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. Clp1 is essential for 3'-end processing of mRNAs. This region carries the P-loop suggesting it is the region that binds adenine or g ...CLP1_P is the P-loop carrying domain of Clp1 mRNA cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. Clp1 is essential for 3'-end processing of mRNAs. This region carries the P-loop suggesting it is the region that binds adenine or guanine nucleotide [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein clpf-1
RNA (5'-R(*GP*AP*AP*A)-3')---