4QFU

Crystal structure of a glycoside hydrolase family 5 (BVU_2644) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
DSCOP2 FamilyBVU_2644 C-terminal domain-like 8048077 4005945 SCOP2 (2022-06-29)
DSCOP2 FamilyGH5 catalytic domain-like 8048376 4006076 SCOP2 (2022-06-29)
DSCOP2 SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2 (2022-06-29)
DSCOP2 Superfamily(Trans)glycosidases 8092272 3000313 SCOP2 (2022-06-29)
ESCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
FSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
GSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
HSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
ISCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
JSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
KSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8092271 3001528 SCOP2B (2022-06-29)
LSCOP2B Superfamily(Trans)glycosidases 8092272 3000313 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACollagen_bind_2e4qfuA1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
ADUF4038e4qfuA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
BCollagen_bind_2e4qfuB2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
BDUF4038e4qfuB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
CCollagen_bind_2e4qfuC2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
CDUF4038e4qfuC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
DCollagen_bind_2e4qfuD1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
DDUF4038e4qfuD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
ECollagen_bind_2e4qfuE2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
EDUF4038e4qfuE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
FCollagen_bind_2e4qfuF2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
FDUF4038e4qfuF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
GCollagen_bind_2e4qfuG1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
GDUF4038e4qfuG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
HCollagen_bind_2e4qfuH2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
HDUF4038e4qfuH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
ICollagen_bind_2e4qfuI1 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
IDUF4038e4qfuI2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
JCollagen_bind_2e4qfuJ2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
JDUF4038e4qfuJ1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
KCollagen_bind_2e4qfuK2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
KDUF4038e4qfuK1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)
LCollagen_bind_2e4qfuL2 A: beta sandwichesX: Glycosyl hydrolase domain-likeH: Glycosyl hydrolase domain (From Topology)T: Glycosyl hydrolase domainF: Collagen_bind_2ECOD (1.6)
LDUF4038e4qfuL1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: DUF4038ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF12904Putative collagen-binding domain of a collagenase (Collagen_bind_2)Putative collagen-binding domain of a collagenaseThis domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the PDB:3kzs structure determined from Swiss:Q8A905 (information derived from TOPSAN).Domain
A, B, C, D, E
PF13204Protein of unknown function (DUF4038) (DUF4038)Protein of unknown function (DUF4038)- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR024749Putative collagen-binding domainDomain
A, B, C, D, E
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B, C, D, E
IPR025277Apiosidase-like, catalytic domainDomain