5OLQ

Rhamnogalacturonan lyase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Pectin lyase-like	8076371	3001746	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Pectin lyase-like	8076371	3001746	SCOP2B (2022-06-29)
C	SCOP2 Family	Pectate transeliminase	8076370	4000952	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Pectin lyase-like	8076371	3001746	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF4990	e5olqA1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF4990	ECOD (1.6)
B	DUF4990	e5olqB1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF4990	ECOD (1.6)
C	DUF4990	e5olqC1	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Pectin lyase-like (From Topology)	T: Pectin lyase-like	F: DUF4990	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF16380	Rhamnogalacturonan lyase BT_4170-like, C-terminal (BT_4170-like_C)	Rhamnogalacturonan lyase BT_4170-like, C-terminal	This domain, previously known as DUF4990, is found at the C terminus of a group of proteins mainly from Bacteroides species, including the rhamnogalacturonan lyase BT_4170 from Bacteroides thetaiotaomicron [1,2].	Domain
A, B, C	PF22842	Pel9A-like, right handed beta helix region (Pel9A-like_beta_helix)	Pel9A-like, right handed beta helix region	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Rhamnogalacturonan lyase	lyase activity carbon-oxygen lyase activity, acting on polysaccharides catalytic activity carbon-oxygen lyase activity alpha-galactosidase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity galactosidase activity cation binding ion binding binding metal ion binding small molecule binding	-	extracellular region cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR012334	Pectin lyase fold	Homologous Superfamily
A, B, C	IPR032153	BT_4170-like, C-terminal	Domain
A, B, C	IPR052052	Polysaccharide Lyase 9	Family
A, B, C	IPR053868	Pel9A-like, right handed beta-helix region	Domain
A, B, C	IPR011050	Pectin lyase fold/virulence factor	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.