Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d6c12b3 All alpha proteins Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
A [auth B]d6c12b1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
A [auth B]d6c12b2 Alpha and beta proteins (a+b) Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
C [auth A]d6c12a3 All alpha proteins Spectrin repeat-like Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
C [auth A]d6c12a1 Alpha and beta proteins (a/b) FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
C [auth A]d6c12a2 Alpha and beta proteins (a+b) Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydogenase (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
B [auth D]d6c12d_ All alpha proteins YgfY-like YgfY-like automated matches automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)
D [auth C]d6c12c_ All alpha proteins YgfY-like YgfY-like automated matches automated matches (Escherichia coli K-12 ) [TaxId: 83333 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilySuccinate dehydrogenase/fumarate reductase domain-like 8056067 3000054 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyL-aspartate oxidase C-terminal domain-like 8056068 3000021 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilySuccinate dehydrogenase/fumarate reductase domain-like 8056067 3000054 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyL-aspartate oxidase C-terminal domain-like 8056068 3000021 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]Succ_DH_flav_Ce6c12B3 A: alpha bundlesX: Spectrin repeat-likeH: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology)T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domainF: Succ_DH_flav_CECOD (1.6)
A [auth B]FAD_binding_2e6c12B1 A: a+b complex topologyX: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology)H: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology)T: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domainF: FAD_binding_2ECOD (1.6)
A [auth B]FAD_binding_3_1ste6c12B2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: FAD_binding_3_1stECOD (1.6)
C [auth A]Succ_DH_flav_Ce6c12A3 A: alpha bundlesX: Spectrin repeat-likeH: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain (From Topology)T: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domainF: Succ_DH_flav_CECOD (1.6)
C [auth A]FAD_binding_2e6c12A1 A: a+b complex topologyX: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology)H: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain (From Topology)T: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domainF: FAD_binding_2ECOD (1.6)
C [auth A]FAD_binding_3_1ste6c12A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: FAD_binding_3_1stECOD (1.6)
B [auth D]Sdh5e6c12D1 A: alpha arraysX: YgfY-like (DUP399, Pfam03937) (From Topology)H: YgfY-like (DUP399, Pfam03937) (From Topology)T: YgfY-like (DUP399, Pfam03937)F: Sdh5ECOD (1.6)
D [auth C]Sdh5e6c12C1 A: alpha arraysX: YgfY-like (DUP399, Pfam03937) (From Topology)H: YgfY-like (DUP399, Pfam03937) (From Topology)T: YgfY-like (DUP399, Pfam03937)F: Sdh5ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth D]1.10.150.250 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
D [auth C]1.10.150.250 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
C [auth A]
PF02910Fumarate reductase flavoprotein C-term (Succ_DH_flav_C)Fumarate reductase flavoprotein C-termThis family contains fumarate reductases, succinate dehydrogenases and L-aspartate oxidases.Domain
A [auth B],
C [auth A]
PF00890FAD binding domain (FAD_binding_2)FAD binding domain- Family
B [auth D],
D [auth C]
PF03937Flavinator of succinate dehydrogenase (Sdh5)Flavinator of succinate dehydrogenaseThis family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron trans ...This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans [1]. Bacterial homologues of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterised as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria [2]. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, Pfam:PF13166, whose E. coli member YgfX, expressed from the same operon as YgfY [3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
C [auth A]
Succinate dehydrogenase flavoprotein subunit
B [auth D],
D [auth C]
FAD assembly factor SdhE-