6H9E
Structure of glutamate mutase reconstituted with homo-coenzyme B12
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d6h9ea_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Cobalamin (vitamin B12)-binding domain | Cobalamin (vitamin B12)-binding domain | Glutamate mutase, small subunit | (Clostridium cochlearium ) [TaxId: 1494 ], | SCOPe (2.08) |
C | d6h9ec_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Cobalamin (vitamin B12)-binding domain | Cobalamin (vitamin B12)-binding domain | Glutamate mutase, small subunit | (Clostridium cochlearium ) [TaxId: 1494 ], | SCOPe (2.08) |
B | d6h9eb_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Cobalamin (vitamin B12)-dependent enzymes | Glutamate mutase, large subunit | Glutamate mutase, large subunit | (Clostridium cochlearium ) [TaxId: 1494 ], | SCOPe (2.08) |
D | d6h9ed_ | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | Cobalamin (vitamin B12)-dependent enzymes | Glutamate mutase, large subunit | Glutamate mutase, large subunit | (Clostridium cochlearium ) [TaxId: 1494 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cobalamin (vitamin B12)-binding domain | 8044100 | 3001260 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cobalamin (vitamin B12)-binding domain | 8044100 | 3001260 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043856 | 3000609 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cobalamin (vitamin B12)-dependent enzymes | 8043856 | 3000609 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | B12-binding | e6h9eA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
C | B12-binding | e6h9eC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: B12-binding | ECOD (1.6) |
B | Met_asp_mut_E | e6h9eB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Met_asp_mut_E | ECOD (1.6) |
D | Met_asp_mut_E | e6h9eD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Met_asp_mut_E | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.280 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Cobalamin-binding domain | CATH (utative) |
C | 3.40.50.280 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Cobalamin-binding domain | CATH (utative) |
B | 3.20.20.240 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Methylmalonyl-CoA mutase | CATH (utative) |
B | 3.90.970.10 | Alpha Beta | Alpha-Beta Complex | Glutamate mutase, C-terminal domain | CATH (utative) | |
D | 3.20.20.240 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Methylmalonyl-CoA mutase | CATH (utative) |
D | 3.90.970.10 | Alpha Beta | Alpha-Beta Complex | Glutamate mutase, C-terminal domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02310 | B12 binding domain (B12-binding) | B12 binding domain | This domain binds to B12 (adenosylcobamide)[1-3], it is found in several enzymes, such as glutamate mutase Swiss:Q05488, methionine synthase Swiss:Q99707 and methylmalonyl-CoA mutase Swiss:P22033. It contains a conserved DxHxxGx(41)SxVx(26)GG motif, ... | Domain | |
PF06368 | Methylaspartate mutase E chain (MutE) (Met_asp_mut_E) | Methylaspartate mutase E chain (MutE) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036724 | Cobalamin-binding domain superfamily | Homologous Superfamily | |
IPR006158 | Cobalamin (vitamin B12)-binding domain | Domain | |
IPR006394 | Glutamate mutase sigma subunit | Family | |
IPR014714 | Glutamate mutase E subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR016176 | Cobalamin (vitamin B12)-dependent enzyme, catalytic | Homologous Superfamily | |
IPR006396 | Glutamate mutase epsilon subunit | Family |