Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6pw0a_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Cd6pw0c_ Membrane and cell surface proteins and peptides Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Bd6pw0b2 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Bd6pw0b1 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Bd6pw0b3 Artifacts Tags Tags Tags C-terminal Tags (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Dd6pw0d2 All beta proteins Cupredoxin-like Cupredoxins Periplasmic domain of cytochrome c oxidase subunit II automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Dd6pw0d1 Membrane and cell surface proteins and peptides Transmembrane helix hairpin Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c oxidase subunit II-like, transmembrane region automated matches (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)
Dd6pw0d3 Artifacts Tags Tags Tags C-terminal Tags (Cereibacter sphaeroides 2.4.1 ) [TaxId: 272943 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACOX1e6pw0A1 A: alpha superhelicesX: Cytochrome c oxidase subunit I-likeH: Cytochrome c oxidase subunit I-like (From Topology)T: Cytochrome c oxidase subunit I-likeF: COX1ECOD (1.6)
CCOX1e6pw0C1 A: alpha superhelicesX: Cytochrome c oxidase subunit I-likeH: Cytochrome c oxidase subunit I-like (From Topology)T: Cytochrome c oxidase subunit I-likeF: COX1ECOD (1.6)
BCOX2e6pw0B1 A: beta sandwichesX: Cupredoxin-likeH: Cupredoxin-related (From Topology)T: Cupredoxin-relatedF: COX2ECOD (1.6)
BCOX2_TMe6pw0B2 A: extended segmentsX: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)T: Cytochrome c oxidase subunit II-like, transmembrane regionF: COX2_TMECOD (1.6)
DCOX2e6pw0D2 A: beta sandwichesX: Cupredoxin-likeH: Cupredoxin-related (From Topology)T: Cupredoxin-relatedF: COX2ECOD (1.6)
DCOX2_TMe6pw0D1 A: extended segmentsX: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)H: Cytochrome c oxidase subunit II-like, transmembrane region (From Topology)T: Cytochrome c oxidase subunit II-like, transmembrane regionF: COX2_TMECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B1.10.287.90 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)
B2.60.40.420 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteinsCATH (utative)
D1.10.287.90 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (utative)
D2.60.40.420 Mainly Beta Sandwich Immunoglobulin-like Cupredoxins - blue copper proteinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family
B, D
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domain- Domain
B, D
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Cytochrome c oxidase subunit 1
B, D
Cytochrome c oxidase subunit 2

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B, C, D
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage