7AZG
DNA polymerase sliding clamp from Escherichia coli with peptide 4 bound
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA clamp | 8038081 | 3000780 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA clamp | 8038076 | 3000780 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA clamp | 8038082 | 3000780 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DNA_pol3_beta | e7azgA2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
A | DNA_pol3_beta_2 | e7azgA1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
A | DNA_pol3_beta_3 | e7azgA3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
B | DNA_pol3_beta | e7azgB2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
B | DNA_pol3_beta_2 | e7azgB1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
B | DNA_pol3_beta_3 | e7azgB3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
C | DNA_pol3_beta | e7azgC2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
C | DNA_pol3_beta_2 | e7azgC1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
C | DNA_pol3_beta_3 | e7azgC3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
D | DNA_pol3_beta | e7azgD2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
D | DNA_pol3_beta_2 | e7azgD1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
D | DNA_pol3_beta_3 | e7azgD3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
E | DNA_pol3_beta | e7azgE2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
E | DNA_pol3_beta_2 | e7azgE1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
E | DNA_pol3_beta_3 | e7azgE3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
F | DNA_pol3_beta | e7azgF2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
F | DNA_pol3_beta_2 | e7azgF1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
F | DNA_pol3_beta_3 | e7azgF3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
G | DNA_pol3_beta | e7azgG2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
G | DNA_pol3_beta_2 | e7azgG1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
G | DNA_pol3_beta_3 | e7azgG3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
H | DNA_pol3_beta | e7azgH2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta | ECOD (1.6) |
H | DNA_pol3_beta_2 | e7azgH1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_2 | ECOD (1.6) |
H | DNA_pol3_beta_3 | e7azgH3 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: DNA_pol3_beta_3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02768 | DNA polymerase III beta subunit, C-terminal domain (DNA_pol3_beta_3) | DNA polymerase III beta subunit, C-terminal domain | A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold. | Domain | |
PF02767 | DNA polymerase III beta subunit, central domain (DNA_pol3_beta_2) | DNA polymerase III beta subunit, central domain | A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold. | Domain | |
PF00712 | DNA polymerase III beta subunit, N-terminal domain (DNA_pol3_beta) | DNA polymerase III beta subunit, N-terminal domain | A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR046938 | DNA clamp superfamily | Homologous Superfamily | |
IPR001001 | DNA polymerase III, beta sliding clamp | Family | |
IPR022634 | DNA polymerase III, beta sliding clamp, N-terminal | Domain | |
IPR022635 | DNA polymerase III, beta sliding clamp, C-terminal | Domain | |
IPR022637 | DNA polymerase III, beta sliding clamp, central | Domain |