Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099398 3000736 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099400 3000736 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100956 3000750 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain 8099396 3000637 SCOP2B (2022-06-29)
AA [auth 4]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
CA [auth 6]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2 FamilyLight-harvesting complex subunits 8105875 4003043 SCOP2 (2022-06-29)
I [auth G]SCOP2 SuperfamilyLight-harvesting complex subunits 8105876 3000199 SCOP2 (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
W [auth Z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Y [auth 2]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
FA [auth X]SCOP2 FamilyPufX membrane protein 8107527 4005146 SCOP2 (2022-06-29)
FA [auth X]SCOP2 SuperfamilyPufX membrane protein-like 8107528 3002563 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth L]Photo_RCe7f0lL1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
B [auth M]Photo_RCe7f0lM1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
C [auth H]PRCH_Ce7f0lH1 A: beta barrelsX: SH3H: PRC-barrel domain (From Topology)T: PRC-barrel domainF: PRCH_CECOD (1.6)
C [auth H]PRCH_Ne7f0lH2 A: extended segmentsX: Photosystem II reaction centre subunit H, transmembrane region (From Topology)H: Photosystem II reaction centre subunit H, transmembrane region (From Topology)T: Photosystem II reaction centre subunit H, transmembrane regionF: PRCH_NECOD (1.6)
D [auth A]LHC_likee7f0lA1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
F [auth D]LHC_likee7f0lD1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
H [auth F]LHC_likee7f0lF1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
J [auth I]LHC_likee7f0lI1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
L [auth K]LHC_likee7f0lK1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
N [auth O]LHC_likee7f0lO1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
P [auth Q]LHC_likee7f0lQ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
R [auth S]LHC_likee7f0lS1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
T [auth V]LHC_likee7f0lV1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
V [auth Y]LHC_likee7f0lY1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
X [auth 1]LHC_likee7f0l11 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Z [auth 3]LHC_likee7f0l31 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
AA [auth 4]LHC_likee7f0l41 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
CA [auth 6]LHC_likee7f0l61 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
E [auth B]LHC_likee7f0lB1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
EA [auth 8]LHC_likee7f0l81 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
G [auth E]LHC_likee7f0lE1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
I [auth G]LHC_likee7f0lG1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
K [auth J]LHC_likee7f0lJ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
M [auth N]LHC_likee7f0lN1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
O [auth P]LHC_likee7f0lP1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Q [auth R]LHC_likee7f0lR1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
S [auth T]LHC_likee7f0lT1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
U [auth W]LHC_likee7f0lW1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
W [auth Z]LHC_likee7f0lZ1 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
Y [auth 2]LHC_likee7f0l21 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
BA [auth 5]LHC_likee7f0l51 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
DA [auth 7]LHC_likee7f0l71 A: extended segmentsX: Bacterial light-harvesting complex subunits (From Topology)H: Bacterial light-harvesting complex subunits (From Topology)T: Bacterial light-harvesting complex subunitsF: LHC_likeECOD (1.6)
FA [auth X]RhodobacterPufXe7f0lX1 A: extended segmentsX: Intrinsic membrane protein pufX (From Topology)H: Intrinsic membrane protein pufX (From Topology)T: Intrinsic membrane protein pufXF: RhodobacterPufXECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
C [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain
BA [auth 5],
DA [auth 7]
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunit- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth L]Photosynthetic reaction center L subunit
B [auth M]Reaction center protein M chain
C [auth H]Reaction center protein H chain
Light-harvesting protein B-875 alpha chain
Antenna pigment protein beta chain
BA [auth 5],
DA [auth 7]
Light-harvesting protein B-875 alpha chain
FA [auth X]PufX-
GA [auth U]protein-U- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
BA [auth 5],
DA [auth 7]
IPR000066Antenna complex, alpha/beta subunitDomain
BA [auth 5],
DA [auth 7]
IPR018332Antenna complex, alpha subunitFamily
BA [auth 5],
DA [auth 7]
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
BA [auth 5],
DA [auth 7]
IPR035889Light-harvesting complexHomologous Superfamily
FA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891