X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherISOMORPHOUS TO NATIVE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch method7.2CRYSTALLIZED FROM 12% PEG 8000, 50MM MOPS PH 7.2. BATCH METHOD. SOAKED IN 5MM P-HYDROXYPHENYLACETIC ACID, batch method
Crystal Properties
Matthews coefficientSolvent content
3.0659.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.12α = 100.2
b = 65.08β = 111.44
c = 76.3γ = 105.81
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray300IMAGE PLATERIGAKU RAXIS II1994-08-16M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5528.0695.60.3812.622608919
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.552.788.10.00719.51.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONISOMORPHOUS TO NATIVEFREE RISOMORPHOUS TO NATIVE2.5528.0626089182095.60.13660.2199BASED ON NATIVE40.98
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor26.9
p_staggered_tor20.6
p_scangle_it9.739
p_scbond_it7.464
p_planar_tor5.2
p_mcangle_it4.588
p_mcbond_it3.236
p_multtor_nbd0.319
p_singtor_nbd0.183
p_xyhbond_nbd0.161
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor26.9
p_staggered_tor20.6
p_scangle_it9.739
p_scbond_it7.464
p_planar_tor5.2
p_mcangle_it4.588
p_mcbond_it3.236
p_multtor_nbd0.319
p_singtor_nbd0.183
p_xyhbond_nbd0.161
p_chiral_restr0.144
p_planar_d0.045
p_angle_d0.041
p_plane_restr0.0258
p_bond_d0.015
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5980
Nucleic Acid Atoms
Solvent Atoms606
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
ROTAVATAdata scaling