1N6Y

RIP-phasing on Bovine Trypsin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829825% polyethylene glycol (PEG) 8000, 0.2 M ammonium sulphate, 0.1 M Tris buffer, pH 8, and 100 mM benzylamine, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1843.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.241α = 90
b = 56.752β = 90
c = 66.204γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-06-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9763ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.44299.830.0511.213.14104340971-312.31
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4797.40.3122.711.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONRIP - Radiation-Damage Induced PhasingTHROUGHOUT1.4424097140971206199.830.1420.1420.140510.17021RANDOM14.552
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.10.020.08
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.18
r_dihedral_angle_1_deg6.285
r_scangle_it4.876
r_scbond_it3.656
r_mcangle_it2.799
r_sphericity_free1.774
r_mcbond_it1.758
r_angle_refined_deg1.633
r_rigid_bond_restr1.419
r_nbd_refined0.199
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.18
r_dihedral_angle_1_deg6.285
r_scangle_it4.876
r_scbond_it3.656
r_mcangle_it2.799
r_sphericity_free1.774
r_mcbond_it1.758
r_angle_refined_deg1.633
r_rigid_bond_restr1.419
r_nbd_refined0.199
r_symmetry_vdw_refined0.179
r_symmetry_hbond_refined0.156
r_chiral_restr0.125
r_xyhbond_nbd_refined0.125
r_bond_refined_d0.017
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1629
Nucleic Acid Atoms
Solvent Atoms288
Heterogen Atoms25

Software

Software
Software NamePurpose
ProDCdata collection
SCALAdata scaling
SHELXDphasing
SHARPphasing
REFMACrefinement
CCP4data scaling