1N8K

Horse Liver Alcohol Dehydrogenase Val292Thr Mutant Complexed to NAD+ and Pyrazole


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HLDPDB ENTRY 1HLD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17277MPD, pH 7.0, dialysis, temperature 277K, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.1341.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.31α = 91.94
b = 51.38β = 102.97
c = 92.67γ = 109.93
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.13200.058322.2218390
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.131.1646.20.1720.1726.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HLD1.1320277740218390781381.520.144560.143750.16739RANDOM18.194
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.390.390.940.04-1.06
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.728
r_sphericity_free6.172
r_dihedral_angle_1_deg6.037
r_scangle_it5.376
r_scbond_it3.593
r_mcangle_it2.62
r_mcbond_it1.75
r_angle_refined_deg1.699
r_rigid_bond_restr1.539
r_nbd_other0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.728
r_sphericity_free6.172
r_dihedral_angle_1_deg6.037
r_scangle_it5.376
r_scbond_it3.593
r_mcangle_it2.62
r_mcbond_it1.75
r_angle_refined_deg1.699
r_rigid_bond_restr1.539
r_nbd_other0.305
r_nbd_refined0.212
r_symmetry_vdw_refined0.183
r_symmetry_hbond_refined0.154
r_nbtor_other0.126
r_chiral_restr0.109
r_bond_refined_d0.015
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5605
Nucleic Acid Atoms
Solvent Atoms717
Heterogen Atoms102

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement