1NOX
NADH OXIDASE FROM THERMUS THERMOPHILUS
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 6 | 0.05 M MES-TRIS BUFFER PH 6.0, 26 % PEG 4000, 0.3 M NACL, 50 MM FMN |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.4 | 47 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 62.53 | α = 90 |
b = 60.6 | β = 90 |
c = 56.66 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 283 | IMAGE PLATE | MARRESEARCH | MIRRORS | 1993-11-09 | M |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | MPG/DESY, HAMBURG BEAMLINE BW6 | MPG/DESY, HAMBURG | BW6 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 1.59 | 96.2 | 0.071 | 0.069 | 6.2 | 3.9 | 28064 | 18.2 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1 | 1.59 | 1.68 | 95.3 | 0.071 | 0.071 | 3.2 | 3.8 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | Mean Isotropic B | ||||||||
X-RAY DIFFRACTION | ISOMORPHOUS AND MOLECULAR REPLACEMENT | MODEL FROM ISOMORPHOUS REPLACEMENT | 1.59 | 21 | 28064 | 28064 | 96.2 | 0.1896 | 0.1823 | 0.20432 | 23.3 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
p_transverse_tor | 29.7 |
p_staggered_tor | 16 |
p_planar_tor | 4.1 |
p_scangle_it | 4.017 |
p_scbond_it | 2.503 |
p_mcangle_it | 2.423 |
p_mcbond_it | 1.651 |
p_multtor_nbd | 0.274 |
p_singtor_nbd | 0.173 |
p_chiral_restr | 0.134 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1571 |
Nucleic Acid Atoms | |
Solvent Atoms | 93 |
Heterogen Atoms | 31 |
Software
Software | |
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Software Name | Purpose |
X-PLOR | model building |
REFMAC | refinement |
X-PLOR | refinement |
MOSFLM | data reduction |
CCP4 | data scaling |
SCALA | data scaling |
X-PLOR | phasing |