X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HLDPDB ENTRY 1HLD

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17277MPD, 50 mM ammonium tris-[(hydroxymethyl)methyl]-2-aminosulfonate buffer, 0.25 mM EDTA, pH 7.0, dialysis, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.1441.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.095α = 90
b = 180.34β = 106.36
c = 87γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.00APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.572094.290.0470.04732.93.3191371191371124.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.571.63790.25.22.816092

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HLD1.57201191371191371115994.290.15270.152430.19991RANDOM19.166
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.960.08-1.75-0.17
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded6.339
r_dihedral_angle_1_deg5.932
r_sphericity_free5.824
r_scangle_it5.009
r_scbond_it3.344
r_mcangle_it2.094
r_angle_refined_deg1.469
r_mcbond_it1.319
r_rigid_bond_restr1.301
r_nbd_refined0.198
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded6.339
r_dihedral_angle_1_deg5.932
r_sphericity_free5.824
r_scangle_it5.009
r_scbond_it3.344
r_mcangle_it2.094
r_angle_refined_deg1.469
r_mcbond_it1.319
r_rigid_bond_restr1.301
r_nbd_refined0.198
r_symmetry_vdw_refined0.18
r_symmetry_hbond_refined0.141
r_xyhbond_nbd_refined0.1
r_chiral_restr0.096
r_bond_refined_d0.014
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11140
Nucleic Acid Atoms
Solvent Atoms1249
Heterogen Atoms224

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing