1YCM
Solution Structure of matrix metalloproteinase 12 (MMP12) in the presence of N-Isobutyl-N-[4-methoxyphenylsulfonyl]glycyl hydroxamic acid (NNGH)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.9 mM MMP12 U-15N,13C; 10 mM deuterated Tris, 5 mM CaCl2, 0.1 mM ZnCl2, 0.3 M NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.3 M NaCl | 7.2 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 0.9 mM MMP12 U-15N,13C; 10 mM deuterated Tris, 5 mM CaCl2, 0.1 mM ZnCl2, 0.3 M NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.3 M NaCl | 7.2 | ambient | 298 | |
3 | 2D NOESY | 0.9 mM MMP12 U-15N,13C; 10 mM deuterated Tris, 5 mM CaCl2, 0.1 mM ZnCl2, 0.3 M NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.3 M NaCl | 7.2 | ambient | 298 | |
4 | HNHA | 0.9 mM MMP12 U-15N,13C; 10 mM deuterated Tris, 5 mM CaCl2, 0.1 mM ZnCl2, 0.3 M NaCl; 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.3 M NaCl | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
2 | Bruker | AVANCE | 800 |
3 | Bruker | AVANCE | 700 |
4 | Bruker | DRX | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry, simulated annealing, torsion angle dynamics, residue dipolar couplings | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 20 (lowest energy) |
Additional NMR Experimental Information | |
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Details | This structure was determined using distance, dihedral angle and H-bond restraints with residue dipolar coupling restraints |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | BRUNGER |
2 | processing | XwinNMR | 3.1 | BRUNGER |
3 | data analysis | XEASY | 1.3 | Guntert |
4 | structure solution | DYANA | 1.5 | Guntert |
5 | refinement | Amber | 6.0 | Kollman |