X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5277.1515% PEG 3350, 250 mM Na formate, spermine tetra-HCl, n-decanoyl sucrose, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties
Matthews coefficientSolvent content
2.2645.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.15α = 90
b = 89.6β = 90
c = 124.89γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDNOIR-1Rosenbaum-Rock monochromator #1 high-resolution double-crystal sagittal focusing, Rosenbaum-Rock monochromator #2 double crystal, Rosenbaum-Rock vertical focusing mirror2005-02-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 4.2.21.1271ALS4.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.644.895.90.05913.36.518177981779
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6692.20.4593.95.44446

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.644.87771377713386791.110.1760.1760.1750.204RANDOM14.693
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.030.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.252
r_dihedral_angle_3_deg14.269
r_dihedral_angle_4_deg13.463
r_dihedral_angle_1_deg6.602
r_scangle_it2.956
r_scbond_it2.081
r_angle_refined_deg1.407
r_angle_other_deg1.306
r_mcangle_it1.274
r_mcbond_it1.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.252
r_dihedral_angle_3_deg14.269
r_dihedral_angle_4_deg13.463
r_dihedral_angle_1_deg6.602
r_scangle_it2.956
r_scbond_it2.081
r_angle_refined_deg1.407
r_angle_other_deg1.306
r_mcangle_it1.274
r_mcbond_it1.11
r_symmetry_vdw_other0.242
r_nbd_refined0.21
r_nbd_other0.193
r_mcbond_other0.192
r_nbtor_refined0.187
r_symmetry_vdw_refined0.173
r_xyhbond_nbd_refined0.136
r_symmetry_hbond_refined0.115
r_chiral_restr0.087
r_nbtor_other0.087
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4818
Nucleic Acid Atoms
Solvent Atoms517
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction
d*TREKdata scaling
SHARPphasing