3DTZ

Crystal structure of Putative Chlorite dismutase TA0507


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.92970.1M Tris pH 7.8, 0.2M Ammonium Formate, 18%PEG3350., pH 7.9, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties
Matthews coefficientSolvent content
2.1743.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.403α = 90
b = 135.728β = 110.33
c = 74.147γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152008-02-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97857APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.815098.90.0744.526.9111997110752-320.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.811.8391.50.4253.965.22526

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.8150110556110556553898.740.1690.1690.167050.20591RANDOM22.053
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.28-0.38-0.49-0.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.402
r_dihedral_angle_4_deg15.778
r_dihedral_angle_3_deg13.39
r_dihedral_angle_1_deg5.693
r_scangle_it3.232
r_scbond_it2.233
r_mcangle_it1.367
r_angle_refined_deg1.323
r_mcbond_it0.867
r_nbtor_refined0.303
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.402
r_dihedral_angle_4_deg15.778
r_dihedral_angle_3_deg13.39
r_dihedral_angle_1_deg5.693
r_scangle_it3.232
r_scbond_it2.233
r_mcangle_it1.367
r_angle_refined_deg1.323
r_mcbond_it0.867
r_nbtor_refined0.303
r_nbd_refined0.206
r_symmetry_hbond_refined0.18
r_symmetry_vdw_refined0.17
r_xyhbond_nbd_refined0.167
r_chiral_restr0.102
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8943
Nucleic Acid Atoms
Solvent Atoms1032
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing