X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.62930.2 M Ammonium sulfate, 0.1 M Sodium acetate trihydrate pH 4.6, 30% PEG MME 2000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3748

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.959α = 90
b = 61.959β = 90
c = 206.288γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2009-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.0809APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.22599.20.08220.95.22434424149
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2899.40.552.34.92364

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2252291622916123399.290.204190.204190.20210.24376RANDOM23.406
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.07-0.140.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.479
r_dihedral_angle_4_deg21.796
r_dihedral_angle_3_deg19.097
r_dihedral_angle_1_deg9.274
r_scangle_it7.353
r_scbond_it4.931
r_mcangle_it3.115
r_mcbond_it1.965
r_angle_refined_deg0.703
r_chiral_restr0.063
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.479
r_dihedral_angle_4_deg21.796
r_dihedral_angle_3_deg19.097
r_dihedral_angle_1_deg9.274
r_scangle_it7.353
r_scbond_it4.931
r_mcangle_it3.115
r_mcbond_it1.965
r_angle_refined_deg0.703
r_chiral_restr0.063
r_gen_planes_refined0.019
r_bond_refined_d0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3357
Nucleic Acid Atoms
Solvent Atoms78
Heterogen Atoms65

Software

Software
Software NamePurpose
Locallydata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling