X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52910.1M HEPES, 0.8M Sodium dihydrogen phosphate, 0.8M Potassium dihydrogen phosphate, 3% w/v 6-Aminohexanoic acid, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.160.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.396α = 90
b = 102.776β = 90.06
c = 92.412γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315r2010-02-03MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9108, 1.7394, 1.7423, 1.7035DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8992.4599.90.06513165622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9699.70.67627.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8992.45124989661699.520.184070.183140.20189RANDOM16.393
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.32-0.050.3-0.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.999
r_dihedral_angle_4_deg15.163
r_dihedral_angle_3_deg13.432
r_dihedral_angle_1_deg4.992
r_scangle_it3.386
r_scbond_it2.01
r_mcangle_it1.3
r_angle_refined_deg1.246
r_mcbond_it0.683
r_chiral_restr0.091
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.999
r_dihedral_angle_4_deg15.163
r_dihedral_angle_3_deg13.432
r_dihedral_angle_1_deg4.992
r_scangle_it3.386
r_scbond_it2.01
r_mcangle_it1.3
r_angle_refined_deg1.246
r_mcbond_it0.683
r_chiral_restr0.091
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8961
Nucleic Acid Atoms
Solvent Atoms703
Heterogen Atoms255

Software

Software
Software NamePurpose
GDAdata collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
SCALAdata scaling