4E1S
X-ray crystal structure of the transmembrane beta-domain from intimin from EHEC strain O157:H7
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | LIPIDIC CUBIC PHASE MONOOLEIN | 4.5 | 294 | 0.1 M sodium citrate, pH 4.5-5.5, 0.05-0.1 M sodium chloride, 0.1-0.15 M magnesium chloride, 30-34% PEG400, LIPIDIC CUBIC PHASE MONOOLEIN, temperature 294K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.46 | 50.1 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 116.565 | α = 90 |
b = 120.248 | β = 90 |
c = 39.093 | γ = 90 |
Symmetry | |
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Space Group | C 2 2 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | MARMOSAIC 300 mm CCD | K-B pair of biomorph mirrors | 2010-12-17 | M | SINGLE WAVELENGTH | |||||
2 | 1 | x-ray | 100 | CCD | MARMOSAIC 300 mm CCD | K-B pair of biomorph mirrors | 2011-03-23 | M | MAD |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 23-ID-B | 1.034375 | APS | 23-ID-B |
2 | SYNCHROTRON | APS BEAMLINE 23-ID-B | 0.98069,0.95044,0.98047 | APS | 23-ID-B |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1,2 | 1.85 | 50 | 93.6 | 0.088 | 8.5 | 5.1 | 23801 | 22224 | 1.85 | 1.85 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1,2 | 1.85 | 1.92 | 71.5 | 0.578 | 3.9 | 1648 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | MAD, MOLECULAR REPLACEMENT | 1.855 | 27.899 | 23801 | 22197 | 1152 | 93.26 | 0.1779 | 0.1779 | 0.175 | 0.233 | RANDOM | 32.0012 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
22.9519 | -0.0277 | -3.9726 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 25.568 |
f_angle_d | 1.143 |
f_chiral_restr | 0.08 |
f_bond_d | 0.006 |
f_plane_restr | 0.004 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 1960 |
Nucleic Acid Atoms | |
Solvent Atoms | 163 |
Heterogen Atoms | 313 |
Software
Software | |
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Software Name | Purpose |
SCALEPACK | data scaling |
PHASER | phasing |
SHARP | phasing |
SOLOMON | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Blu-Ice | data collection |
HKL-2000 | data reduction |