X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSIONvapor diffusion
Crystal Properties
Matthews coefficientSolvent content
2.244.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 124.468α = 90
b = 124.468β = 90
c = 105.927γ = 90
Symmetry
Space GroupI 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMAR CCD 165 mmOSMIC MIRRORSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125090.30.0955.82.149416
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.07890.30724831

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT23049166248290.280.19190.18950.236RANDOM29.348
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.130.27
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.166
r_dihedral_angle_3_deg13.727
r_dihedral_angle_4_deg12.713
r_dihedral_angle_1_deg4.885
r_scangle_it1.684
r_scbond_it1.039
r_angle_refined_deg0.977
r_angle_other_deg0.808
r_mcangle_it0.655
r_mcbond_it0.346
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.166
r_dihedral_angle_3_deg13.727
r_dihedral_angle_4_deg12.713
r_dihedral_angle_1_deg4.885
r_scangle_it1.684
r_scbond_it1.039
r_angle_refined_deg0.977
r_angle_other_deg0.808
r_mcangle_it0.655
r_mcbond_it0.346
r_mcbond_other0.068
r_chiral_restr0.054
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6544
Nucleic Acid Atoms
Solvent Atoms468
Heterogen Atoms194

Software

Software
Software NamePurpose
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction