4J14

Crystal Structure of Human Cytochrome P450 CYP46A1 with Posaconazole Bound


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4ENH 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.829015% PEG 8000, 50 mM posaconazole, 50 mM potassium phosphate, 20% glycerol, pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 290.K
Crystal Properties
Matthews coefficientSolvent content
2.5451.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.64α = 90
b = 121.64β = 90
c = 143.39γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315rRh coated flat mirror2011-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-11.09717SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.592.7899.860.110.115.87.1179681799346.193
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.641000.5350.0140.5357.32715

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ENH2.592.78179931796897799.860.215880.213370.2626RANDOM39.104
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-9.31-9.3118.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.642
r_dihedral_angle_4_deg20.175
r_dihedral_angle_3_deg17.764
r_dihedral_angle_1_deg6.113
r_scangle_it3.801
r_scbond_it2.319
r_mcangle_it1.526
r_angle_refined_deg1.381
r_mcbond_it0.805
r_chiral_restr0.115
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.642
r_dihedral_angle_4_deg20.175
r_dihedral_angle_3_deg17.764
r_dihedral_angle_1_deg6.113
r_scangle_it3.801
r_scbond_it2.319
r_mcangle_it1.526
r_angle_refined_deg1.381
r_mcbond_it0.805
r_chiral_restr0.115
r_bond_refined_d0.014
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3507
Nucleic Acid Atoms
Solvent Atoms82
Heterogen Atoms100

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling