X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.22930.1M sodium cacodylate, 2.0M lithium sulfate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8156.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.302α = 90
b = 90.56β = 124.96
c = 87.519γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC QUANTUM 315rmirrors2012-03-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL13B11.0000NSRRCBL13B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.73099.40.04921.34.979524
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7699.90.29457936

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONPDB entry 1H5RTHROUGHOUT1.73079472399499.10.19350.1920.2234RANDOM28.9319
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1-1.730.92-1.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.106
r_dihedral_angle_4_deg18.327
r_dihedral_angle_3_deg14.706
r_dihedral_angle_1_deg7.076
r_scangle_it6.398
r_scbond_it4.051
r_mcangle_it2.712
r_mcbond_it1.7
r_angle_refined_deg1.455
r_chiral_restr0.122
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.106
r_dihedral_angle_4_deg18.327
r_dihedral_angle_3_deg14.706
r_dihedral_angle_1_deg7.076
r_scangle_it6.398
r_scbond_it4.051
r_mcangle_it2.712
r_mcbond_it1.7
r_angle_refined_deg1.455
r_chiral_restr0.122
r_bond_refined_d0.019
r_gen_planes_refined0.017
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4518
Nucleic Acid Atoms
Solvent Atoms504
Heterogen Atoms169

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
MOLREPphasing