5KUK

Crystal Structure of Inward Rectifier Kir2.2 K62W Mutant


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3SPI 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION293.15tri-sodium citrate, NaCl, PEG 400
Crystal Properties
Matthews coefficientSolvent content
4.0369.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.695α = 90
b = 82.695β = 90
c = 182.441γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90PIXELDECTRIS PILATUS 6M-F2015-06-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.9792APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1291.3999.60.07614.322.940670
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.071000.740.6751.72.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3SPI291.3938705196599.130.200380.199060.22667RANDOM35.074
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.461.46-2.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.384
r_dihedral_angle_4_deg19.036
r_dihedral_angle_3_deg12.878
r_dihedral_angle_1_deg5.589
r_long_range_B_refined4.962
r_long_range_B_other4.728
r_scangle_other2.187
r_mcangle_it1.884
r_mcangle_other1.883
r_scbond_it1.294
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.384
r_dihedral_angle_4_deg19.036
r_dihedral_angle_3_deg12.878
r_dihedral_angle_1_deg5.589
r_long_range_B_refined4.962
r_long_range_B_other4.728
r_scangle_other2.187
r_mcangle_it1.884
r_mcangle_other1.883
r_scbond_it1.294
r_scbond_other1.294
r_mcbond_it1.107
r_mcbond_other1.107
r_angle_refined_deg1.025
r_angle_other_deg0.718
r_chiral_restr0.063
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2613
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing