5LSS

Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72930.1M KSCN, 31.0%w/v PEG 3350, 0.1M HEPES/NaOHpH=7
Crystal Properties
Matthews coefficientSolvent content
1.8734.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.33α = 90
b = 77.216β = 90
c = 76.358γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 300K2013-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7954.387.918.84.9109861

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.7954.2920681108987.460.164520.161540.22581RANDOM30.648
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.79-0.821.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.571
r_dihedral_angle_3_deg13.996
r_dihedral_angle_4_deg13.862
r_long_range_B_refined6.034
r_long_range_B_other6.03
r_dihedral_angle_1_deg5.607
r_scbond_it2.433
r_scbond_other2.433
r_mcbond_it1.823
r_mcbond_other1.783
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.571
r_dihedral_angle_3_deg13.996
r_dihedral_angle_4_deg13.862
r_long_range_B_refined6.034
r_long_range_B_other6.03
r_dihedral_angle_1_deg5.607
r_scbond_it2.433
r_scbond_other2.433
r_mcbond_it1.823
r_mcbond_other1.783
r_angle_refined_deg1.417
r_angle_other_deg0.915
r_chiral_restr0.087
r_bond_refined_d0.011
r_bond_other_d0.002
r_gen_planes_refined
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_it
r_mcangle_other
r_scangle_it
r_scangle_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1901
Nucleic Acid Atoms
Solvent Atoms277
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
REFMACphasing