X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293200 mM sodium chloride, 100 mM Bis-Tris buffer pH 5.5 and 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.6353.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.545α = 90
b = 127.545β = 90
c = 263.641γ = 90
Symmetry
Space GroupI 4 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-06-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9163DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1248.731000.99812.826.873408
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.041000.621.628

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT248.7369738366799.960.183410.181710.21534RANDOM29.093
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.930.93-1.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.853
r_dihedral_angle_4_deg17.175
r_dihedral_angle_3_deg12.777
r_dihedral_angle_1_deg6.766
r_long_range_B_refined5.3
r_long_range_B_other5.246
r_scangle_other3.87
r_scbond_it2.406
r_scbond_other2.406
r_mcangle_it2.203
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.853
r_dihedral_angle_4_deg17.175
r_dihedral_angle_3_deg12.777
r_dihedral_angle_1_deg6.766
r_long_range_B_refined5.3
r_long_range_B_other5.246
r_scangle_other3.87
r_scbond_it2.406
r_scbond_other2.406
r_mcangle_it2.203
r_mcangle_other2.203
r_angle_refined_deg1.51
r_mcbond_it1.479
r_mcbond_other1.475
r_angle_other_deg0.929
r_chiral_restr0.089
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6850
Nucleic Acid Atoms
Solvent Atoms450
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
SHELXCDphasing
SHELXEmodel building
ARP/wARPmodel building
BUCCANEERmodel building
Cootmodel building