X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5OLQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293200 mM potassium chloride and 20% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
34.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.42α = 90
b = 76.6β = 90
c = 122.76γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97912DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.261.799.80.99813.46.922486
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2699.50.5531.67.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5OLQ2.261.3821253118299.790.235060.2330.27105RANDOM67.136
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.562.030.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.581
r_dihedral_angle_3_deg14.228
r_dihedral_angle_4_deg9.495
r_dihedral_angle_1_deg7.311
r_long_range_B_refined2.001
r_long_range_B_other2.001
r_angle_refined_deg1.381
r_angle_other_deg0.93
r_mcangle_it0.626
r_mcangle_other0.626
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.581
r_dihedral_angle_3_deg14.228
r_dihedral_angle_4_deg9.495
r_dihedral_angle_1_deg7.311
r_long_range_B_refined2.001
r_long_range_B_other2.001
r_angle_refined_deg1.381
r_angle_other_deg0.93
r_mcangle_it0.626
r_mcangle_other0.626
r_scangle_other0.606
r_scbond_it0.407
r_scbond_other0.407
r_mcbond_it0.366
r_mcbond_other0.365
r_chiral_restr0.172
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3257
Nucleic Acid Atoms
Solvent Atoms3
Heterogen Atoms69

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
XDSdata reduction
XDSdata scaling
Aimlessdata scaling
MOLREPphasing
Cootmodel building