X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL, PRECIPITANT: 24% (W/W) PEG1500, 0.2 M L-PROLINE, 0.1 M HEPES (pH 7.5), DROPLETS RATIO: 1:1
Crystal Properties
Matthews coefficientSolvent content
2.8556.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.081α = 90
b = 187.29β = 90
c = 258.387γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2015-10-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0000APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.755098.40.1130.1240.055.55.785387
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.752.888.80.8640.8145.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.7549.38467604349379.70.20280.20140.2296RANDOM58.07
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.832.13-3.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.245
r_dihedral_angle_3_deg14.723
r_dihedral_angle_4_deg8.408
r_dihedral_angle_1_deg7.763
r_angle_refined_deg1.854
r_angle_other_deg1.239
r_mcangle_it0.479
r_mcbond_it0.264
r_mcbond_other0.264
r_chiral_restr0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.245
r_dihedral_angle_3_deg14.723
r_dihedral_angle_4_deg8.408
r_dihedral_angle_1_deg7.763
r_angle_refined_deg1.854
r_angle_other_deg1.239
r_mcangle_it0.479
r_mcbond_it0.264
r_mcbond_other0.264
r_chiral_restr0.1
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18430
Nucleic Acid Atoms
Solvent Atoms213
Heterogen Atoms160

Software

Software
Software NamePurpose
HKL-3000data collection
HKL-3000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
PHASERphasing