X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5277PS: 10 mg/mL in 5 mM Na-MOPS pH 7.5, 25 mM NaCl 1:1 with WS containing 0.2 M LiCl, 20% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.1542.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.339α = 90
b = 53.481β = 109.746
c = 63.224γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 XE 16M2021-04-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5742.0588.50.1470.160.0620.9987.76.535379
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.571.61002.6932.911.0930.320.76.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1tvn1.5742.0535333176088.3740.1860.18390.22670.0517.864
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.380.2570.4040.629
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.731
r_dihedral_angle_3_deg13.406
r_dihedral_angle_1_deg7.297
r_dihedral_angle_2_deg7.047
r_lrange_it3.506
r_lrange_other3.401
r_scangle_it2.584
r_scangle_other2.583
r_scbond_it1.743
r_scbond_other1.727
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.731
r_dihedral_angle_3_deg13.406
r_dihedral_angle_1_deg7.297
r_dihedral_angle_2_deg7.047
r_lrange_it3.506
r_lrange_other3.401
r_scangle_it2.584
r_scangle_other2.583
r_scbond_it1.743
r_scbond_other1.727
r_mcangle_other1.652
r_mcangle_it1.651
r_angle_refined_deg1.338
r_mcbond_it1.179
r_mcbond_other1.179
r_angle_other_deg0.479
r_nbd_refined0.218
r_symmetry_nbd_other0.191
r_nbtor_refined0.178
r_xyhbond_nbd_refined0.148
r_nbd_other0.117
r_symmetry_nbd_refined0.115
r_symmetry_xyhbond_nbd_refined0.079
r_symmetry_nbtor_other0.075
r_chiral_restr0.061
r_gen_planes_refined0.008
r_bond_refined_d0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2290
Nucleic Acid Atoms
Solvent Atoms247
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing