GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1T2A designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1T2A_GDP_D_1302 | 88% | 48% | 0.093 | 0.97 | 0.95 | 1.05 | 2 | 3 | 0 | 0 | 100% | 1 |
1T2A_GDP_C_1202 | 84% | 48% | 0.091 | 0.952 | 0.98 | 1.01 | 2 | 3 | 0 | 0 | 100% | 1 |
1T2A_GDP_A_1002 | 77% | 48% | 0.104 | 0.944 | 0.99 | 1.01 | 2 | 3 | 0 | 0 | 100% | 1 |
1T2A_GDP_B_1102 | 64% | 49% | 0.12 | 0.919 | 0.94 | 1.04 | 2 | 3 | 0 | 0 | 100% | 1 |
5IN5_GDP_A_1002 | 99% | 44% | 0.053 | 0.986 | 0.89 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
5IN4_GDP_D_403 | 93% | 50% | 0.068 | 0.963 | 0.83 | 1.11 | - | 2 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |